Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0242 ATGTTGCACTGTGCGAACGCGTCGGGGAATCTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGGTACTTTTCTGGGTTCAACGCTGTTTTCTCTTCTTCTTCTTCTTCTTCTCTTCATGTTCAAGATTCCTTGATGTTGGCTGCTGATTCCGGTTGTGCGCTTGGTGAAGTGGTGGCTCAGGCTCAGGCTCAGGCTCAGACTCGCTCCATGAATAAGCCGTCTCTTGCCGGGTTTGATTCAAGTTCTTCAATTTCAAGGACTTTTAGTTGTCCGCCTGCTCTGGTGGAGCCCGAGCCCAGGCCCAGGCCCACTGACTCCTCATTTGGGAAAGAGTGTTTGAAGAAAAGGAAACCTGACAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATACCAAAGACAAGAGGATCAAAGTGGGCGCTGACGATGAACAATCCAAAATCACAGGGAGCCCCAAGAGTAACACGAAAACTAATAGCAACAAAAGAGAGGCTTGGGCAGATACTTCAAATTCAAAGCAAAATTCCAAACCCTCCGAGGTTCAAAATCAAAAGCCTGATTACATTCACGTACGAGCACGTCGTGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTCAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAGGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGAATTCAGCGTTGACGATCTATTTGAAAAAGAGGTGTTTCCTACTTCTGCTGCCAATTTTCCAAACATTGGAATGTCATCAGATTTGACTAACTCTGCCTATCTTCAATTTAATTCACCACAACAAATGGTTTCGTATGGAGGATTAGACACGGGGATTAACCCTCCCTGTATGGGTCTAAAAAGGAGTATAAGTGCTCATGTATCAATGCCTGAAACATATCATCACTCCTCCTGTTTCACACAAATGCTGCCCTCCTCAGCATGGGAAGGTGATTTCCAAAACCTTTGCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATCTGTCCTCAGGACTTGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1215 0.4461 MLHCANASGNLAGDMTVLERQRARMKWQEEQGYFSGFNAVFSSSSSSSLHVQDSLMLAADSGCALGEVVAQAQAQAQTRSMNKPSLAGFDSSSSISRTFSCPPALVEPEPRPRPTDSSFGKECLKKRKPDKLHNAKFVTENDTKDKRIKVGADDEQSKITGSPKSNTKTNSNKREAWADTSNSKQNSKPSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLEFSVDDLFEKEVFPTSAANFPNIGMSSDLTNSAYLQFNSPQQMVSYGGLDTGINPPCMGLKRSISAHVSMPETYHHSSCFTQMLPSSAWEGDFQNLCNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0242 404 MobiDBLite consensus disorder prediction 99 198 - -
Pvu9g0242 404 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Pvu9g0242 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Pvu9g0242 404 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 383 IPR024097 GO:0006355
Pvu9g0242 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 276 IPR036638 GO:0046983
Pvu9g0242 404 MobiDBLite consensus disorder prediction 158 194 - -
Pvu9g0242 404 CDD bHLH_AtBPE_like 198 283 - -
Pvu9g0242 404 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 15 383 - -
Pvu9g0242 404 SMART finulus 214 264 IPR011598 GO:0046983
Pvu9g0242 404 MobiDBLite consensus disorder prediction 114 154 - -
Pvu9g0242 404 Gene3D - 205 280 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0242 Pvu-Chr9 5363978 5366588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0242 14 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.901 1.29e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g0242 HLH 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0242 - - gmx:100798855 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0242 9 5363978 5366588 Pvu9g0242 9 5363978 5366588 ECH
Pvu9g0242 9 5363978 5366588 Pvu2g0295 2 2998186 3000661 ECH