Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0221 ATGGCCTTCGCCACCAGCGCGTTGCTCTCTTCAAACTTTCTCGGAAGGAAGGTCGTGGTATCGCCCCCAACACCGAAAACAACAAAACAATCCACTCTGTTACCGTTTATTTTCAAGAGAACCATCTTAAAAGCTCACAAACCCAATTCGGAAAAACTGAATTCCGCATCTTCACAAGCTGCTCTAGCGGCCCTTATATTTTCCTCCGCCACTCTCTCTGCCACCCCACACGCCCTAGCCGCTGACAACGTCACCCCTCCACCTGTAATCGAAGCGCAACAGAGCCAATTAAACCCCTCCAACTCAACCTCCTCACCTTTCTCTACGAACCTTCTCACAGCACCCAAACCCCAAGCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGCTACAGCGAGTTCTTGAACGCCGTTAAGAAGGGTAAAGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCCGCCCTCCAACTAACCGCCGTTGACGGCCGTCGAGCCTCCGTTGTCGTCCCCAATGACCCCGACCTCATCGACATCCTCGCCATGAACGGTGTCGACATTTCCGTCGCCGAAGCCGAATCACCTAACGGCTTGTTCAACATCATAGGCAACTTGCTCTTCCCCTTTCTAGCATTCGCCGGCCTATTCTTCCTCTTCCGAAGGGCCCAAGGAGGCCCCGGGGGCCCCGGTGGGCTTGGAGGGCCCATGGACTTCGGGCGGAATAAGTCCAAATTCCAAGAAGTCCCGGAAACCGGTGTTACCTTCGGTGACGTGGCGGGCGCAGACCAAGCGAAGCTTGAGCTGCAAGAGGTTGTTGATTTTTTGAAGAACCCTGATAAGTACACTGCGCTGGGTGCGAAGATTCCGAAGGGGTGTCTTCTGGTCGGGCCACCGGGAACCGGGAAGACGCTTCTAGCTAGGGCTGTGGCGGGGGAAGCGGGAGTGCCGTTTTTCTCGTGCGCGGCTTCAGAGTTCGTGGAGCTGTTTGTGGGGGTTGGTGCGTCGAGGGTGAGGGATTTGTTTGAGAAGGCGAAGAATAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTCGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGGAACGATGAGAGGGAACAGACCATTAACCAGCTTCTCACGGAGATGGATGGGTTTTCTGGTAATTCTGGAGTTATCGTTTTGGCTGCAACTAACAGACCTGATGTTCTTGATTCTGCTTTGTTAAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTAGATAGACCTGATGTTGCTGGCAGAGTTAAGATCCTTCAGGTGCATTCAAGAGGAAAGGCGCTTGCAAAGGATGTTGACTTTGATAAAATTGCAAGGCGAACCCCGGGATTCACTGGGGCTGATCTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCTGAAAAGAAAAACGCTGTGGTCTCAGACGAGAAGAAGAAATTAGTAGCATATCACGAGGCTGGCCATGCTTTGGTTGGTGCTTTAATGCCTGAATATGACCCCGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTCTTTGCTCCAAGTGAAGAGAGGCTCGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCTGTTGCTCTGGGTGGAAGGGTCGCTGAAGAGGTTATTTTTGGCCAGGAAAATGTCACTACTGGAGCATCAAACGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCTATTGGTGGACCTGGAGGAAATCCATTCTTGGGTCAACAGATGTCAACGCAAAAGGATTACTCCATGGCAACTGCCGATGTAGTGGATGCGGAAGTACGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACAAATATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTTGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAGGCCGAATTATATGTTGCATAA 2130 0.5061 MAFATSALLSSNFLGRKVVVSPPTPKTTKQSTLLPFIFKRTILKAHKPNSEKLNSASSQAALAALIFSSATLSATPHALAADNVTPPPVIEAQQSQLNPSNSTSSPFSTNLLTAPKPQASSDLPEGTNWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVVVPNDPDLIDILAMNGVDISVAEAESPNGLFNIIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRNKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKNKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYSRATNIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0221 709 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 198 698 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g0221 709 MobiDBLite consensus disorder prediction 92 125 - -
Pvu9g0221 709 SMART AAA_5 287 426 IPR003593 -
Pvu9g0221 709 Pfam AAA+ lid domain 446 489 IPR041569 -
Pvu9g0221 709 CDD AAA 258 423 - -
Pvu9g0221 709 Pfam ATPase family associated with various cellular activities (AAA) 292 423 IPR003959 GO:0005524|GO:0016887
Pvu9g0221 709 Gene3D - 425 500 - -
Pvu9g0221 709 Gene3D Peptidase M41 501 704 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0221 709 Pfam Peptidase family M41 505 698 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0221 709 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 709 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu9g0221 709 Gene3D - 242 424 IPR027417 -
Pvu9g0221 709 ProSitePatterns AAA-protein family signature. 394 412 IPR003960 GO:0005524|GO:0016887
Pvu9g0221 709 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 495 IPR027417 -
Pvu9g0221 709 PANTHER METALLOPROTEASE M41 FTSH 54 701 - -
Pvu9g0221 709 SUPERFAMILY FtsH protease domain-like 505 699 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g0221 709 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 54 701 - -
Pvu9g0221 709 Gene3D - 124 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0221 Pvu-Chr9 4468306 4472411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0221 248 700 Miscellaneous Gene Families AT5G53170 49.559 4.98e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0221 K03798 - gmx:100807408 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0009 1 165085 167549 Pvu9g0221 9 4468306 4472411 PCT