Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0214 ATGTCACCGGGGACACCAACCCACGCCCCAGAGGACGGAAAACACTACCCTGCTCCGCTCTCTCCTCACGACGACGTCGTCAGAGACTCCTCTCTCTTCTGGGACACTCTCAAACGTTTTCACTTCCTCATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTACACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCATCAACTACCACAAGTGCTTCTTTTGTATTGAAGAAACATTACTTCAGTCTTCTCTATCATTATGAACAAGTTCACTTTTTCAAAGCTCGGGGTTGTGTCTATACTCCTTCAACAGATGCATCTTCCGGAAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTGGAATATTCTCCTAAGCCCTTAAATAGTAGTCCTGAATCTCGTGCTGAAGAAACTTCATGTCTTTCGGGGAATGGAACGATAGAGGGGAAATTCGAGTGTGGTTATTTAGTGTCTGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCTTCCTACGATTCCTCCTCAGCATGAGAATGCCATTGTGCCATTCAAAAGCAAAGCTCATCGTTCTGGTCGTAGGAGGAGAAACAAGAGAAGGTGGGACCCCAACTATCCAAAACCTAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAGATGATTGGCCAGTCATGGAACAGTCTTAACCCCGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACTGAGTACAAGGAGAAGATGAAGCTTAGGCAGACTCCAGAAGTTGGACTTCCATAG 972 0.4475 MSPGTPTHAPEDGKHYPAPLSPHDDVVRDSSLFWDTLKRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSSTTTSASFVLKKHYFSLLYHYEQVHFFKARGCVYTPSTDASSGNSPSWRPELAIVEYSPKPLNSSPESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVALPTIPPQHENAIVPFKSKAHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLNPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGLP* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0214 323 MobiDBLite consensus disorder prediction 221 242 - -
Pvu9g0214 323 Gene3D High mobility group box domain 226 320 IPR036910 -
Pvu9g0214 323 Gene3D - 21 123 IPR036431 GO:0003677
Pvu9g0214 323 SMART hmgende2 241 310 IPR009071 -
Pvu9g0214 323 MobiDBLite consensus disorder prediction 223 237 - -
Pvu9g0214 323 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Pvu9g0214 323 CDD HMGB-UBF_HMG-box 242 305 - -
Pvu9g0214 323 SMART ARID_2 24 114 - -
Pvu9g0214 323 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Pvu9g0214 323 SUPERFAMILY HMG-box 239 312 IPR036910 -
Pvu9g0214 323 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Pvu9g0214 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Pvu9g0214 323 SMART bright_3 28 119 IPR001606 GO:0003677
Pvu9g0214 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 317 - -
Pvu9g0214 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 317 - -
Pvu9g0214 323 MobiDBLite consensus disorder prediction 1 22 - -
Pvu9g0214 323 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Pvu9g0214 323 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0214 Pvu-Chr9 4119072 4121600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0214 9 316 ARID Transcription Factor Family AT1G76110 61.465 2.03e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu9g0214 ARID 3.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0214 - - gmx:100784746 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0214 9 4119072 4121600 Pvu9g0214 9 4119072 4121600 ECH