Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0196 ATGGCCAGTGTCATGTTTGTTTTGGTCAGCTTCCTCGTATTATTATGTTGTTTCTCAGTTAACATTTGTGCCTTCTCACCTTCTGGATGGACCAGTGCACATGCCACCTTTTATGGAGGTAGCGATGCCTCTGGGACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGAACTGATACAGCAGCACTGAGTACTGCCTTATTTAACGATGGAGCTTCATGTGGGGAGTGCTACAAAATCATGTGCAATTATCAAGCAGACCCCAAATGGTGCTTGAAGGGAACATCTGTAACCATAACTGCCACAAACTTTTGCCCTCCCAATTTTGCTCTGCCAAGCAACAACGGTGGGTGGTGCAACCCTCCTCTCAAACACTTTGATATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATAGAGGAGGGATCGTGCCCGTTTTGTTCCAAAGGGTTCCATGCATGAAGAAGGGAGGGGTTAGGTTCAGTGTGAATGGGAGAGACTACTTTGAGCTTGTGCTGATCAACAATGTGGGAGGAGCTGGATCTGTTCAATCTGTGTCGATCAAAGGTTCAAAAACTGGATGGATGACTATGTCAAGAAATTGGGGAGCTAATTGGCAATCCAATGCCTTTTTGAATGGTCAATCTTTGTCTTTCAGAGTCACAACAACCGATGGTGTAACCAAACTTTTTCAAGATGTTGTTCCATCCAATTGGGCTTTTGGCCAGAGTTTCCCTACCACTGTTCAGTTTTAA 771 0.4514 MASVMFVLVSFLVLLCCFSVNICAFSPSGWTSAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYKIMCNYQADPKWCLKGTSVTITATNFCPPNFALPSNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCMKKGGVRFSVNGRDYFELVLINNVGGAGSVQSVSIKGSKTGWMTMSRNWGANWQSNAFLNGQSLSFRVTTTDGVTKLFQDVVPSNWAFGQSFPTTVQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0196 256 Gene3D - 17 159 IPR036908 -
Pvu9g0196 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Pvu9g0196 256 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Pvu9g0196 256 PANTHER EXPANSIN-A15 6 256 IPR002963 GO:0009664
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Pvu9g0196 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Pvu9g0196 256 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Pvu9g0196 256 Gene3D - 163 256 IPR036749 -
Pvu9g0196 256 SMART dpbb_1 65 153 IPR007112 -
Pvu9g0196 256 SUPERFAMILY PHL pollen allergen 160 250 IPR036749 -
Pvu9g0196 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Pvu9g0196 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Pvu9g0196 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Pvu9g0196 256 PANTHER EXPANSIN 6 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0196 Pvu-Chr9 3497612 3499649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0196 65 256 Expansin Gene Family AT1G20190 80.208 4.26e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0196 - - gmx:100527629 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0196 9 3497612 3499649 Pvu9g0196 9 3497612 3499649 ECH
Pvu1g0040 1 341806 344139 Pvu9g0196 9 3497612 3499649 PCT