Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0194 ATGGTTACTACCACCGTTGATTCATCCTCTAATCATCACTCACCTTCTGGTGCTGCCGATACCTATAACTTCCCGCGAAAAAACCTGCCATCTCCGTGGGCCCAGGTCGTTCGCGGTGCCGACTCTGAACCTAACCATCAATCACCGCCTTCTTCTTCCTCTTCCTCTTCCCTCGATTCTGTTCATTCTAACGGTCCTGCTTCTGATGCCGTTGATACCGCCGTGAAACCTGTGTGGAAGAGACCGTCTAATGATGCCACGGAAATCGGGCCTGTAATGGGCGCAATATCTTGGCCCGCTTTATCCGAGTCCACCAAGCCCACTCCTAAATCGACATCTGACTCCATCGATGATGAATCACTCACCCATCCTAAGGGTCTTGTTGTTTCAGACTCTCCTCAGAAACAAGCTTCTGCTAATGTGAAACCTAGTCCTGCAATAAACTATGGTATGGGTAATAGACAGAGGTCAATGAAGCGTGGAGGGGCAAATGGTAATAATGTTGGCTCTGGTCCTGTTCAGAACAACTTCTCTGGCGCTTCCCCTCATCTTCCTCCACCGCCACCCTTTCCCGTGCTTCAGATTCCTCCTAGTACATTTGCACATGGGATACCTGGGGTTCCAGTTCCTTCTCCTAGAGAACCTTACAGAAACAAAAACTGGGAAACGAGGCCTCCGCTCGGAGGGTTTATGCCGCCAATGAATGAGAATCGAAGTCCCTCTCGCCGGGGAAATGCTGGACATCATCCACGTGGAGATGGATCCTATCACAGCAGTTATGGCAACAGGCGCGATCAGGATCGTGGAGGATATGCAAATACTAGAGATAGTCATGTAAATCATCAGAGGATGCCTCCAAGGGGATTAATGAGGCCTCCGCCGCCTAATCCTGCTTCATTTATGGGGCCTCAACCTATGCGACCCTTCGCAAACCCTCCTGGGTTTCCTGAATTCTATTATTTCCCAACACTACAATTTGAACCCTTTGGGGGCATGCCGTTTTTAACACATGCACCTCCTCCTGCAATGTTCTTCCCGGTTGCGGAAACCCCTCTCACCAATACAATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAGGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTTTGATTGCAAGCTTCCCACGT 1185 0.4878 MVTTTVDSSSNHHSPSGAADTYNFPRKNLPSPWAQVVRGADSEPNHQSPPSSSSSSSLDSVHSNGPASDAVDTAVKPVWKRPSNDATEIGPVMGAISWPALSESTKPTPKSTSDSIDDESLTHPKGLVVSDSPQKQASANVKPSPAINYGMGNRQRSMKRGGANGNNVGSGPVQNNFSGASPHLPPPPPFPVLQIPPSTFAHGIPGVPVPSPREPYRNKNWETRPPLGGFMPPMNENRSPSRRGNAGHHPRGDGSYHSSYGNRRDQDRGGYANTRDSHVNHQRMPPRGLMRPPPPNPASFMGPQPMRPFANPPGFPEFYYFPTLQFEPFGGMPFLTHAPPPAMFFPVAETPLTNTIVNQIDYYFSDANLVRDEYLRSNMDEQGWVPITLIASFPR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0194 395 SMART la 350 395 IPR006630 -
Pvu9g0194 395 PANTHER LUPUS LA PROTEIN-RELATED 5 395 IPR045180 -
Pvu9g0194 395 SUPERFAMILY "Winged helix" DNA-binding domain 343 395 IPR036390 -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 258 274 - -
Pvu9g0194 395 PANTHER LA-RELATED PROTEIN 1B 5 395 - -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 159 180 - -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 127 143 - -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 1 18 - -
Pvu9g0194 395 Pfam La domain 356 395 IPR006630 -
Pvu9g0194 395 ProSiteProfiles La-type HTH domain profile. 346 395 IPR006630 -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 1 191 - -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 203 295 - -
Pvu9g0194 395 Gene3D - 346 395 IPR036388 -
Pvu9g0194 395 MobiDBLite consensus disorder prediction 41 67 - -
Pvu9g0194 395 CDD LAM 356 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0194 Pvu-Chr9 3478589 3480559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0194 K18757 - gmx:100775279 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0194 9 3478589 3480559 Pvu9g0194 9 3478589 3480559 ECH
Pvu1g0044 1 362952 367289 Pvu9g0194 9 3478589 3480559 PCT