Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0180 ATGGAAACCGTAGAAATAGTACATTCGTACCACTGTGAGATGCGAACTGAAGAAGTGGGAGTGAAGATCAAACTCAGAGACATATTGAGGATTGATGTGACTATCATTGTTCGATATTATAATCATCATCTAAGTGTTATTGAAACATCAACCTTATTAAAAAGTTCAACTCCCATTAGCTATCAAAATTTCTTTGAAAATAGTATAGATTTCTTAAGGAGTGTGTTGTTCGACCCACGCTGTTCTTACTGCTTCAGCCAAGAAATGGTTGATCCAGTATCAGAAAAAATTGTTAATATGATTAAAGTAGTCTTGGAATTTGGTGATGGTCCTGAGTCAGTAGATTCAGAATGCAAAGAATTGCCTTTGAATATAGACATCATTGTGGATGTAGTTCCAGATGTAGAAAGCGAAGAGGAAGAGGAAGGGGAAGAGATAGAGGAAGAAGAGATGGAGCATTATGCAGTAACGATTCCAGCATCTGCAGAAGCTATTGATTCCCTTAAAACGTTCTCAATTTCACCTTTTTTGAAAAAGAAAACTCATAAGTGCAATATTTGCTTGGAAAATGTTCGTTTTAAAGATAATGAAGAAAATATGAAGTTATCGTCGTTGCCATGTAAACATGTTTTTCATCATCTCTGTATTGTAAAGTGGTTGCAGACAAGTCACACTTGTCCGTTATGTCGTTATCCTATGCCGATTGATAATAACTGA 717 0.357 METVEIVHSYHCEMRTEEVGVKIKLRDILRIDVTIIVRYYNHHLSVIETSTLLKSSTPISYQNFFENSIDFLRSVLFDPRCSYCFSQEMVDPVSEKIVNMIKVVLEFGDGPESVDSECKELPLNIDIIVDVVPDVESEEEEEGEEIEEEEMEHYAVTIPASAEAIDSLKTFSISPFLKKKTHKCNICLENVRFKDNEENMKLSSLPCKHVFHHLCIVKWLQTSHTCPLCRYPMPIDNN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0180 238 Pfam Ring finger domain 183 230 IPR001841 -
Pvu9g0180 238 SUPERFAMILY RING/U-box 164 235 - -
Pvu9g0180 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 235 IPR013083 -
Pvu9g0180 238 SMART ring_2 184 229 IPR001841 -
Pvu9g0180 238 PANTHER F6A14.12 PROTEIN-RELATED 23 234 - -
Pvu9g0180 238 ProSiteProfiles Zinc finger RING-type profile. 184 230 IPR001841 -
Pvu9g0180 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 23 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0180 Pvu-Chr9 3021386 3022102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0180 159 238 C3H Transcription Factor Family AT1G26800 41.250 1.04e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0180 - - pvu:PHAVU_009G017600g 440.654