Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0167 ATGGGGGTGGCACAAGAAGAGAGAGAGGCCCAAGAAGAAAAAGTAGGGCTGAGACAGAGAGGCCCAAGAAGGGAAAGTAGGGCAGAGAGAGAGGGAGGCCCAAATAGGGGAGAAGGGGAGAGAAAGGAAAACAAAAGGCGGGGTGGCGTGTGCATTCGAACTCAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACTCAATCTCATCTCATCACAATATCTCATCACTCACTCTTCACTCAACAACACATCTCTTCTCTTTTGTTTCTTCCAAAATTCATAATCTCACTTTCACCCCCATTTTCCATTTCCCTTTCCAGTTGCTATATAACAGTGTCACTGTTACTGTTACCCGCTCTCTCTGTTTCCCAAACCCTTTCTTCCCTTCTCTTCTCTTCTCCATTGATGTCGACTTCCGGCGAGGATCATCATCAACCCCACCCCCCTCCTCATCCATCTCAATTCAAATTCCACCTATTGCACTCCCCTTCTCACTTTTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCCCCTTGAGTCAAAGATATGAAAGCAATAATTTCAAGTCTCACACAAGTAATCTCGAAGTAGCTCCTGACATGAGCAAAACAGTTAATCTTCCCCCTCCGGTTCAAATCGAGCCTTCCGTAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCAAGAAACACAAAATCTGGGACTCACGGACCTGGTTCCGATTCCCCTAATTCAACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAAGGATGGCACCCTGGATCTTAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAAGACCAAATTAACAGTCTAAAGGCCGAAGTTGAAACTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAAAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAGGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATTAGTTTTCCGGCAAAGACAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGATGACTGCAAGTATGAGGATGATAGTGTCAAACGGGTGAAAGTAACGGATCCATCATGGAATAGTGAGCACTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAGATGATAAAAAAAATACTTCTGAGAGTTTCAATTTTCAGGGATCACAATCATCTGGAATTCAAGAAATAACTCCCACCGATTTTGAAATGGAAGATGACTACTGGTTTCAATCAGATCCTGGAGTGAGGTTAACAGAACTGTGGGAAAATGAGCCGTTGATGCAGATAGATGAGCTTGGAGACGATTAA 1602 0.4276 MGVAQEEREAQEEKVGLRQRGPRRESRAEREGGPNRGEGERKENKRRGGVCIRTQLTAFFALVLAATQSHLITISHHSLFTQQHISSLLFLPKFIISLSPPFSISLSSCYITVSLLLLPALSVSQTLSSLLFSSPLMSTSGEDHHQPHPPPHPSQFKFHLLHSPSHFSPLPHSLFPNFPLSQRYESNNFKSHTSNLEVAPDMSKTVNLPPPVQIEPSVRGKQNGKSKLSRNTKSGTHGPGSDSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQINSLKAEVETLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEELVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKVTDPSWNSEHYRKRGVGLLESQDDKKNTSESFNFQGSQSSGIQEITPTDFEMEDDYWFQSDPGVRLTELWENEPLMQIDELGDD* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0167 533 MobiDBLite consensus disorder prediction 201 249 - -
Pvu9g0167 533 Gene3D - 248 320 IPR036388 -
Pvu9g0167 533 SMART E2F_TDP_2 253 318 IPR003316 GO:0005667|GO:0006355
Pvu9g0167 533 CDD E2F_DD 329 436 IPR032198 GO:0046983
Pvu9g0167 533 PANTHER TRANSCRIPTION FACTOR E2F 163 522 IPR015633 GO:0000978|GO:0006357
Pvu9g0167 533 MobiDBLite consensus disorder prediction 1 46 - -
Pvu9g0167 533 SUPERFAMILY "Winged helix" DNA-binding domain 253 316 IPR036390 -
Pvu9g0167 533 MobiDBLite consensus disorder prediction 468 489 - -
Pvu9g0167 533 Coils Coil 348 368 - -
Pvu9g0167 533 MobiDBLite consensus disorder prediction 219 249 - -
Pvu9g0167 533 SUPERFAMILY E2F-DP heterodimerization region 329 436 IPR037241 -
Pvu9g0167 533 Pfam E2F/DP family winged-helix DNA-binding domain 255 318 IPR003316 GO:0005667|GO:0006355
Pvu9g0167 533 Pfam E2F transcription factor CC-MB domain 334 433 IPR032198 GO:0046983
Pvu9g0167 533 Gene3D - 325 436 - -
Pvu9g0167 533 PANTHER TRANSCRIPTION FACTOR E2FC 163 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0167 Pvu-Chr9 2789850 2794734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0167 138 521 E2F-DP Transcription Factor Family AT1G47870 43.095 2.72e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pvu9g0167 E2F_CC-MB 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0167 K06620 - gmx:100797301 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0167 9 2789850 2794734 Pvu9g0167 9 2789850 2794734 ECH