Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0154 ATGGATGATGCTGGGCATCGTGAAAATGGCAGGCACAAAGCCGATCAATTTAAATCTGCTCAGGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCGGCCATCCAAGAAAGAAATCTGGCCATATCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGAGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGATAATGCGTTTGCAACTCTTCAGTATCGAGAAACCTCGTTAAGTAGTGGCAGTATGCCATCATGCCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAACACAAGGGAGATGCACACAACTGATGTCCTCCCCGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCTAAGTCAACTTCACCTAATAAGAAGACTACAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGCGAAGACTTGAATAAGGTTATGTTTGGCAAGGCACATGAGTGGAAGAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGCAGTGTCTAAGGCTGATTGGAAAGGTCAAGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCAGTATGTTCTTGTACCGGGGTCCTTAAGCAGTGTTACAAATGGGGTAATGGAGGTTGGCAGTCCGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCGAACAAGAGGCATGCTCGGGTTGGAGGTCGAAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTTAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAGTAG 1014 0.4793 MDDAGHRENGRHKADQFKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAFATLQYRETSLSSGSMPSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYNTREMHTTDVLPAAPITSEAGKSRRAKRPKEPKSTSPNKKTTKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0154 337 MobiDBLite consensus disorder prediction 146 189 - -
Pvu9g0154 337 MobiDBLite consensus disorder prediction 158 174 - -
Pvu9g0154 337 SMART GAGA_bind_2 1 337 IPR010409 -
Pvu9g0154 337 Coils Coil 58 85 - -
Pvu9g0154 337 MobiDBLite consensus disorder prediction 1 15 - -
Pvu9g0154 337 PANTHER - 1 206 IPR010409 -
Pvu9g0154 337 PANTHER - 212 337 IPR010409 -
Pvu9g0154 337 MobiDBLite consensus disorder prediction 1 22 - -
Pvu9g0154 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 337 - -
Pvu9g0154 337 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 206 - -
Pvu9g0154 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0154 Pvu-Chr9 2377757 2381806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0154 65 337 BBR or BPC Transcription factor family AT5G42520 65.517 2.82e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pvu9g0154 GAGA_bind 1.2e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0154 - - gmx:100783502 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0154 9 2377757 2381806 Pvu9g0154 9 2377757 2381806 ECH