Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0142 ATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTCGATCAATACCAGATGACTCTCGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAGGAGGTGAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGATCGATCTGAACATGGAAGATCTCAAGCTCCTCGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAG 417 0.4724 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKVVRERK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0142 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 139 - -
Pvu9g0142 139 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pvu9g0142 139 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 Coils Coil 77 111 - -
Pvu9g0142 139 Coils Coil 121 139 - -
Pvu9g0142 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu9g0142 139 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Pvu9g0142 139 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Pvu9g0142 139 ProSiteProfiles K-box domain profile. 84 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g0142 139 PANTHER APETALA3 1 139 - -
Pvu9g0142 139 Pfam K-box region 82 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0142 Pvu-Chr9 2214098 2214931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0142 1 139 MADS-box Gene Family AT3G54340 67.626 2.38e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu9g0142 K-box 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0142 K09264 - gmx:547720 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0142 9 2214098 2214931 Pvu9g0142 9 2214098 2214931 ECH