Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0116 ATGGGAAACTGTCTTCGAAAGCAAGATGATGGTAACAAAACTCAGTACAAGATTCCCACCATCAATAAGCCTCACCAAGGAAGATTAGAGAAAAAGGAAACCACGGAAGGAAGAAATGAAGAAGAGGTGAGAAAACTTATAAACTACACATTGGATGAGTTGAAAAGCACAACAAGAAACTTCAGACCAGACACAGTCTTAGGTGAAGGTGGTTTTGGACGAGTTTTCAAAGGGTGGATTGATAAGAACACGTTCAAACCCTCGAGAGTTGGTGTTGGAATTCCAGTTGCGGTGAAGAAATCTAACCCCGATAGCCTTCAGGGTCTACAAGAATGGAAGAGTGAAGTGCAGTTTTTGGGGAAGCTCTCTCATCCAAACCTAGTTAAACTAATTGGCTACTGCTGGGAGGATAATCAATTCCTGCTGGTATACGAATACATGCAAAAGGGAAGTCTTGAAAGCCACCTGTTCAGAAGAGGTCCAGAACCACTCTCATGGGATATAAGGCTGAAGATAGCAATAGGAGCAGCCAGAGGACTAGCTTTCTTGCATACATCAGAGAAGTCTGTCATCTATCGAGACTTCAAATCCTCCAACATTTTGCTTGATGGGGATTTCAATGCCAAGCTATCAGATTTCGGACTGGCAAAGCTTGGCCCAGTCAACGGTAGATCCCACGTAACCACGCGGGTCATGGGCACCTATGGTTATGCAGCACCTGAATACGTCGCCACAGGGCACCTGTATGTTAAAAGCGATGTGTACGGATTCGGCGTTGTTCTGCTTGAAATACTAACGGGCAGAGCAGCTCTGGACACAAGCCAACCCTTGGATATGCAGAATTTGGTGCAGTGCAGTATGTCATCTCTGGATGACAAAAAGAGACTGAAAAGGATAATGGATCAAAAAATGGAGGACCAATATTCACTTAGAGCTGCATCTCACGTAGCCCAACTTATCCTCAAATGTTTAGAATCTGACCACAGAAAACGACCCTCCATGGTGGAGGTTTTGGCAACCTTAGAAAAAGCACAAACTATGAAGTACAAACCCAAAGGGAATAAAGCCTCTGCAATTCGTCAAACATCAGAGGTGCATCACTCAAATAACCCACGTCGGTCACCACCACCGCTTCACTACAACAACGATTAG 1152 0.4453 MGNCLRKQDDGNKTQYKIPTINKPHQGRLEKKETTEGRNEEEVRKLINYTLDELKSTTRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWKSEVQFLGKLSHPNLVKLIGYCWEDNQFLLVYEYMQKGSLESHLFRRGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGRAALDTSQPLDMQNLVQCSMSSLDDKKRLKRIMDQKMEDQYSLRAASHVAQLILKCLESDHRKRPSMVEVLATLEKAQTMKYKPKGNKASAIRQTSEVHHSNNPRRSPPPLHYNND* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0116 383 CDD STKc_IRAK 67 343 - -
Pvu9g0116 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Pvu9g0116 383 MobiDBLite consensus disorder prediction 349 383 - -
Pvu9g0116 383 Gene3D Transferase(Phosphotransferase) domain 1 147 368 - -
Pvu9g0116 383 MobiDBLite consensus disorder prediction 356 383 - -
Pvu9g0116 383 Gene3D Phosphorylase Kinase; domain 1 31 146 - -
Pvu9g0116 383 ProSiteProfiles Protein kinase domain profile. 61 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g0116 383 Pfam Protein tyrosine and serine/threonine kinase 65 340 IPR001245 GO:0004672|GO:0006468
Pvu9g0116 383 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 34 366 - -
Pvu9g0116 383 ProSitePatterns Protein kinases ATP-binding region signature. 67 100 IPR017441 GO:0005524
Pvu9g0116 383 PANTHER OS01G0588500 PROTEIN-RELATED 34 366 - -
Pvu9g0116 383 MobiDBLite consensus disorder prediction 24 39 - -
Pvu9g0116 383 SUPERFAMILY Protein kinase-like (PK-like) 41 341 IPR011009 -
Pvu9g0116 383 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0116 Pvu-Chr9 1872249 1875195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0116 10 341 Glycoside Hydrolase AT3G07070 46.726 4.27e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu9g0116 PK_Tyr_Ser-Thr 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0116 - - gmx:100812725 583.178