Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0096 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGACGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCGGTGATGCAGAAAGAGAAAAGTTGTGAGGTTAAAAATTCTGCTGATGCGATAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGATCAATTTATTCAATTGGATGGACTTTGCTTCATCAACAGATGGTTAAAGGATACCCAAAAATTTGAGGTTGATGCAAAAGACAGCTTTGTCGAGGAATCAATTACCACATTGTTACGTGCAGTTGAAAAGCTTCATCTAGACCGTGAGAAGTCAATGTCCTCTGGAATTCGCATCACTGTAAGTAACCTTCTTGGCCATCATAGCACTAAGGTTCAGGATAGAGCAAGGACATTGTTTGACAGCTGGAAGGGAGCTGAAAATGCTGATACTGAATCTCATGATGTGGAGCTTGCTAAGGCTGACAATGCAAGCAATGAGATTGTCAGGGACGAAGGCCAGCCATCTGCTGTGAATGAAGCTGGCAATGATAATGATAATGCATCAGAACTAAATGGAACTGTAAATTCTCTATTGAAAAGCTCAGATAATTTGCCGGTACATAGTTCTGCTAATGTGTGTCATTCATCCTCTAGCTTGGAATGTGATGACGTCAAAGAGGGATCAGTAAACCATGTTGACGGTGTTCCTTCTTCTGCTCAAGTAGAACTGCCTTTATGCCCTGCAGATGAGACCACTTCGGTTGCGACCTCTAACTTTTCCCTTCATAATCAAGGCAGCTTTGAAGGACAGTCAGATATGGTTCAGTTAATTGACTTGGCTAAAAGGGAAAAGCAAGAGCAAAACGTTAATGACCCTCCAGAAAAATTTGGAGCACCGGAGATCTGTTCTGTGTCCTCTGAGCCAGAGCTGGAGTCTGTTTCGATTGTTTGCAGTGAAGCAAAAGCACCAGAATCTGTTAAGGGACCAGCTTTGGAGCGAAATGTGGAACACAATGAGGAAGATGTTTGTCATAACTTGCCTATTTCTACTTGTATAAGGACACCTTCATCTGATAGGAGGACTGGGGAAGATGATGTCAGAACTGTAACTAGCTTTACACAAGTTTTCAGAGCTGCAGAAAATGATAAAGACTGTTCTAATGCATTGCAGGATACATCAGTCAGTGACAGTAACTTGGGAAAGACTGAGGTGCCAGATATGTCTGTCTGTGGAGCAGGATCTGTCACACCATCAAAGGAAGGCAAGGGTCATATTTATAACAACAAAGATGTTACATCTATTGGTTCTGATTCTAGTAAACCTGAAATAGATTTCAGAAGGTCTAACATTGTTGACAACAGAGGTTCCGGCAATGAACTTGACTGTGGCATTGTGGATCCTTTAGAATTCGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCCGAAAAAATCTCATATGGCAGAATCAGGCAACCATGCAGTCCAGATTCTGTAAGAAAAGAGGATGTGCTCACTCCTGTCCCACCTGAGGAGGTTTCCTCGAGACACAGTCTTGCTACTGACAACACTGAGGCAGAGCCTGAATGCAGACCTGATGTGGTGTGCTTGGAGGTGACTGAAGTGGTTCAAGATTCAGAAGGTAATTCAGAAAAACGTCCTTGTGGCTTTGATCTCAACGAAGTTGGTTTTGACGATATGGATGTTTGTTTAAATACTACATCGACCCCAATACCTGTTGTATCTGCTTCAAGGCCTACGCCAACTCCTGGGTTACCTGGTGCCCCTTTGCAGTTTGAGGGAACACTTGGTTGGAAAGGATCAGCTGCCACCAGTGCCTTTCGGCCTGCATCTCCCCGTAAATATTGTGATAGTGAGAGAAATCTTTCTGTGGATATGAACTCTGACACTTCCAGGCAGAGGCAGAGGCAGGATTGGCTTGATTTTGATCTAAACGTAGCTGAGGGTGAAGAAGGGAATGCAGAACCTGTTGCTGAATCTTCAGGTGGGCTTTCTGGGCAATCAACAGTTGAATTTAGTTCTAAAAGATCAAGCATGCTTGGATTTGATTTGAACAGTACGGGTGATGATGTTCACATCCAACCTTCAGATCACAGGATGGATGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTACATCGTCGTCGTCATCAATGCAGCCATATGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACTGATTTGGTAGACCTGGGGCACGGTAAGTCTTCTCATATTATCAATGGATATGATTGTTCTAAATCACTAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCTCAATCGTTTTTTCCGAATGGAAAGGCTGTTGAACCTGCAATAGATCTTACAATGCCAAGAGCAGGTGGCATTATAGGGATGGCCCCTGCAGTATCCTTTAATCCATCATCTGGTTTTGGGTATAATGGAGTGCCATCAGCATCAGCAGCACCCACAATGCCTTTTCCATCAGCCATGTACGGGTCAGGTGGCACAATTCCATATATGGTGGACTCAAGAGGATCTCCAGCTGTCCCTCAAGTGGGTGGACCTTCATTAAATATACTTCCATCATCTTACTCTCAGCCACCACCATTCTTTATGAACATGACAGGTACCCAACTCGGTCTGAATGGATTTGGACCTGTACGTCCTAACTTTGACCTGAACTCTGGGTTCATGACTGAGGGTGGGAATAGAGACACATTAGCAGCAAGGCAATTTTTCTTTCCTGGTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGAACCATGCCGCAACCCTCAAGTTCAGGGGTTGGTGGGAAACGAAAGGAACCAGACAGTGGTTGGGAACCCTACCCATATAGCTACAAACATTCGCAACCTCCATGGAAGTAG 2973 0.4433 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKSCEVKNSADAIRQWAAVASTIAATENKDCLDQFIQLDGLCFINRWLKDTQKFEVDAKDSFVEESITTLLRAVEKLHLDREKSMSSGIRITVSNLLGHHSTKVQDRARTLFDSWKGAENADTESHDVELAKADNASNEIVRDEGQPSAVNEAGNDNDNASELNGTVNSLLKSSDNLPVHSSANVCHSSSSLECDDVKEGSVNHVDGVPSSAQVELPLCPADETTSVATSNFSLHNQGSFEGQSDMVQLIDLAKREKQEQNVNDPPEKFGAPEICSVSSEPELESVSIVCSEAKAPESVKGPALERNVEHNEEDVCHNLPISTCIRTPSSDRRTGEDDVRTVTSFTQVFRAAENDKDCSNALQDTSVSDSNLGKTEVPDMSVCGAGSVTPSKEGKGHIYNNKDVTSIGSDSSKPEIDFRRSNIVDNRGSGNELDCGIVDPLEFARQVAQEVNREVSSSSEKISYGRIRQPCSPDSVRKEDVLTPVPPEEVSSRHSLATDNTEAEPECRPDVVCLEVTEVVQDSEGNSEKRPCGFDLNEVGFDDMDVCLNTTSTPIPVVSASRPTPTPGLPGAPLQFEGTLGWKGSAATSAFRPASPRKYCDSERNLSVDMNSDTSRQRQRQDWLDFDLNVAEGEEGNAEPVAESSGGLSGQSTVEFSSKRSSMLGFDLNSTGDDVHIQPSDHRMDGQLFLGRNGYWSPSPTSSSSSMQPYVRNIDLNDRPCLQTDLVDLGHGKSSHIINGYDCSKSLDAPVISLLGAKVEVGKKERVPQSFFPNGKAVEPAIDLTMPRAGGIIGMAPAVSFNPSSGFGYNGVPSASAAPTMPFPSAMYGSGGTIPYMVDSRGSPAVPQVGGPSLNILPSSYSQPPPFFMNMTGTQLGLNGFGPVRPNFDLNSGFMTEGGNRDTLAARQFFFPGQGRAVEEQVRTMPQPSSSGVGGKRKEPDSGWEPYPYSYKHSQPPWK* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0096 990 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Pvu9g0096 990 MobiDBLite consensus disorder prediction 418 444 - -
Pvu9g0096 990 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 156 IPR035441 -
Pvu9g0096 990 MobiDBLite consensus disorder prediction 951 990 - -
Pvu9g0096 990 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 990 - -
Pvu9g0096 990 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Pvu9g0096 990 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 990 - -
Pvu9g0096 990 MobiDBLite consensus disorder prediction 497 534 - -
Pvu9g0096 990 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0096 Pvu-Chr9 1518879 1524263 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu9g0096 Med26 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0096 - - gmx:102669997 1442.56