LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g0090	ATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTTCTGATATGGATGTTGTTGATGCGGCTTTGCATGTCCAGCATGTGGTGTCTTCCCCTACTAGCAATTCCCCTGCTCAGCAACAGCAGGATCAAGTAATGCTCGAACAGGGTGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTGCCAGAGACCAGTGTTATTAGCGAGAATCAGTTTGAGCTAGAAGATTCCAAGACCGTTTCGCACCATGAACTGATCACTCCTAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGAGATACATTTATGAAAGAGATTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGTACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTACGAAAAGCATAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAATGTGGAAAAAGAGACTACTGTCTACCAGGCTCCAGGATCAGGTAGAGCACGAAGGGATGCTGCAGCCCGTGCAATGCAAGGTTGGCATACTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCTACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATGATTAATAAACAGAGGACGCAGGCTGGTTTGGACCATGCTGAGAAAGCTGCAAATATTGAAGGAGATAGACAATTGATCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTACGGGAAACTAAAGATTGTTTCGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTGGTTATAACTGGTCTGCCAGAACACATTGATAATCCATGGGGAATTACCCCCTTCAAAAAGGTAGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCCGCTGTCGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAGCTGTATGA	1260	0.4556	MEDGEKPTGNSHGISDMDVVDAALHVQHVVSSPTSNSPAQQQQDQVMLEQGDDNKNGDSDPSNVPETSVISENQFELEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRDTFMKEIENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSSNVEKETTVYQAPGSGRARRDAAARAMQGWHTQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTQAGLDHAEKAANIEGDRQLITAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV*	420

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu9g0090	419	CDD	ARID	121	206	-	-
Pvu9g0090	419	MobiDBLite	consensus disorder prediction	1	20	-	-
Pvu9g0090	419	Gene3D	-	318	418	IPR008978	-
Pvu9g0090	419	SUPERFAMILY	ARID-like	107	217	IPR036431	GO:0003677
Pvu9g0090	419	CDD	ACD_sHsps_p23-like	334	413	-	-
Pvu9g0090	419	Gene3D	-	120	218	IPR036431	GO:0003677
Pvu9g0090	419	SUPERFAMILY	HSP20-like chaperones	327	414	IPR008978	-
Pvu9g0090	419	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	33	416	IPR045147	GO:0006357
Pvu9g0090	419	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5	33	416	-	-
Pvu9g0090	419	ProSiteProfiles	Small heat shock protein (sHSP) domain profile.	318	419	IPR002068	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g0090	Pvu-Chr9	1348590	1356489	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g0090	28	416	ARID Transcription Factor Family	AT1G76510	62.308	5.03e-161	459

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Pvu9g0090		ARID	2.3e-16	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g0090	-		-	gmx:100777965	728.783

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g0090	9	1348590	1356489	Pvu9g0090	9	1348590	1356489	ECH

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