Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0088 ATGGCGTACCAAGCGATTCAGGGTCCTAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGCTACTCAATTCTCCTTTCGGAGACACCACTTACACCAAAGTCTTCGTAGGAGGGTTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTTGAGGCCGTCGTCATCACCGATAAGAACACTGGGCGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCCGAGGCTGCAAGGAGAGCCTGTGCTGATCCAACTCCTGTTATTGATGGTAGAAGGGCGAATTGTAACTTGGCTTCACTCGGTCGACCACGACCCCCTTTGCCTTATGGACGGGTAAGACCTGCCTCCCCTTATTTTGGAAGTGTGCAAACACCTCGTGGTGCTTATGTTGGAGGCTTTGGGTACCAGCAACCGGTTTCCTACAGCTATCAACAAGGATTAGTTTACCCTCCTTATGGGTATACGGCATATGGACCAGAGTACATCTACCCACAGAATATGTACAACCCATATATGGGGCAACAGTACCTTCAGTTATATGGAGTGCCAGGAACAGTGAATACAACTATTTATCCGTATGGACAATTGGGTCAGGCTATTCCTGGTGGTCATGGTTATTCGGCAATGCAGGGTTATACAGTACCAGGTCATCAAATTGTCCCCTATGCATCCAATGTTAATGCCATAACAACTTCACCTATGCCCGCCATTCAAGCTTCATTTCCTAGTGGAATTGCTGCACCGGTTCCTGGTCAACCACAATTTATTGTTCCTGCTCCTTCTCAGTTCATGCAAAGTGGTGGTCCTGACCAAACAGCTGGGTGA 852 0.4953 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYFGSVQTPRGAYVGGFGYQQPVSYSYQQGLVYPPYGYTAYGPEYIYPQNMYNPYMGQQYLQLYGVPGTVNTTIYPYGQLGQAIPGGHGYSAMQGYTVPGHQIVPYASNVNAITTSPMPAIQASFPSGIAAPVPGQPQFIVPAPSQFMQSGGPDQTAG* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0088 283 Gene3D - 4 117 IPR012677 -
Pvu9g0088 283 SMART rrm1_1 33 105 IPR000504 GO:0003723
Pvu9g0088 283 PANTHER BOULE-RELATED 1 279 IPR037366 GO:0003729
Pvu9g0088 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Pvu9g0088 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Pvu9g0088 283 CDD RRM_RBM24_RBM38_like 32 107 - -
Pvu9g0088 283 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 279 - -
Pvu9g0088 283 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0088 Pvu-Chr9 1331195 1335286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0088 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 2.85e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0088 - - gmx:100779244 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0088 9 1331195 1335286 Pvu9g0088 9 1331195 1335286 ECH