Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0085 ATGAGCATGTCCGGATCTGACATGGTAACCAGGGAGCAATTCACGATTGGGATGCACAACCCTCACAACCCGCACAACCCTCAATCCCAACCGCAACAACCACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGACGAGGCCGATGTTTTCGCCGCACCTACCATCAACATCAACGGCGGAGAATCCTCTCCAGGGGCTGTGCCTCCGGGCTTGGGCCTGGGCCAGGCCCATCCCCAGGCCATGATGGGTAACTCCACTGAGTCACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATACGGGCCTGATGGTGGCATGGCCTTGAGCTTGAACACCACACCTCCTTCCGGTGGCTCCGCGGTGCCTGTTGGCCATTCCGGTGGGGCATTCCCGGCGGCTCCTCTCTCTGATTCTGCCTCAGCCGGTACTGGTACTGGGAAGCGCAGGGGCAGACCTCGTGGTTCTGTTAACAAGAATAAGAAAAGCTCAAAGTTCTATGGGCCAGGAGTTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATTATGTCAATTTCCCAGAGTGGTTCAAGAAATGTTTGCATCTTAAGTGCAAATGGATCCATATCTAATGTGACACTTAGACAGCCTGCCTCGTCTGGTGGAACTGTGACTTATGAGGGGCGATTTGAGATCTTATCACTTGGTGGTTCTTTATTTCTTACTGAAAATGGTGCTCACGGCGAAAGGGCCGGGGGCCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGCGTCTTGGGGGGCGGAGTGGCAGGTCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCACTCCAAGTCTGCAAAGCGGATGAGAAATGTATCTGCCCCAGAAAAGGTTTCCACAGCTGTTGGCCAAAGCAGCTCACCATCAAGGGGCACTCTCAGTGAGTCTTCAGGTGGGGTCGGAAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAATATCAACAGCACCACCCCAACGCCAGGCTTTTCAGGCATGCCCTGGAAGTAA 1110 0.5324 MSMSGSDMVTREQFTIGMHNPHNPHNPQSQPQQPQQQPQLHQNMRMDYAAADEADVFAAPTININGGESSPGAVPPGLGLGQAHPQAMMGNSTESLKRKRGRPRKYGPDGGMALSLNTTPPSGGSAVPVGHSGGAFPAAPLSDSASAGTGTGKRRGRPRGSVNKNKKSSKFYGPGVFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLTENGAHGERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKHSKSAKRMRNVSAPEKVSTAVGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINSTTPTPGFSGMPWK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0085 369 MobiDBLite consensus disorder prediction 1 43 - -
Pvu9g0085 369 CDD DUF296 179 293 IPR005175 -
Pvu9g0085 369 MobiDBLite consensus disorder prediction 1 46 - -
Pvu9g0085 369 MobiDBLite consensus disorder prediction 67 167 - -
Pvu9g0085 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 294 IPR005175 -
Pvu9g0085 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 367 IPR039605 GO:0003680
Pvu9g0085 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 178 295 - -
Pvu9g0085 369 ProSiteProfiles PPC domain profile profile. 172 317 IPR005175 -
Pvu9g0085 369 Gene3D - 180 308 - -
Pvu9g0085 369 SMART AT_hook_2 97 109 IPR017956 GO:0003677
Pvu9g0085 369 SMART AT_hook_2 152 164 IPR017956 GO:0003677
Pvu9g0085 369 MobiDBLite consensus disorder prediction 301 369 - -
Pvu9g0085 369 MobiDBLite consensus disorder prediction 314 363 - -
Pvu9g0085 369 PANTHER OS08G0512400 PROTEIN 27 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0085 Pvu-Chr9 1271445 1275269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0085 88 369 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.103 4.38e-79 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0085 - - pvu:PHAVU_009G008300g 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0085 9 1271445 1275269 Pvu9g0085 9 1271445 1275269 ECH