Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0082 ATGCTGGCAATGGAAGACCTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACTTGGCTTCAAAAGTCTTCAATGGGAGCTTCACTAGTGTCAAGTTTGCTGAGGTTGATCTCAATAGATGTGAGCCGTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGCTTGAGAGACAGAAAATATCCAACTGGACTTAGAACAAACAGGGCCACCGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTTCAGTGCATCAAGTGGAACCCTACTTGGGATGAAGAAGACCCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGACGGTGACTTTTCCCTTCCCCACCCTCACCCTCATCACATTTCTAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCCGGGGAAAAGAGGACTCCACTGGTCCAAGTCCAAGGACATTCAGATGCTTCTTCGTCTCCAACAAAAAATTCTTTACCTCCTTTACTTGCAAGCCCAACTTGCTTTACATTGGAACTAGAATGTCAATCCCAACAAAGCCCGGTTCTCATTCACCACCACCAAGACCAAAACCACCTCTCTCACTCTCACCCTTATCTTTTCCCATTGCATGCATCACCACAACTCACCAACGCCAGAAACCATCCTTCATTTTCTGACCTGTTCTTTAAGCCCCTGCACAACTCACAACAAAACTGCATCTTCAAGGCCAAGGAAAAAACAGCTCCAAAAGTAGTCAAAACGGAGGAGGCTACAGCATTCTATCAGTACCATTTACTAGGTGACGCCAATAACTTGCGGGTGAACCAAAATCCGAGCAATTTCCCAAACCCTTTCCCTGATGTTGAGGTGGATGCTGGGCTGATGGCATTCTCAGGAGGTCCAAATGCTGAAGTTAGGGACATGTCCACCTCAACTGCCTTTAATAGGGTAGGGTTGCAGCAGGTGATAGATGCTGCTCATATCGGAATAGATTCTTGGCCTCTGCCCCAGCATGTTTAA 1131 0.4686 MLAMEDLLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGSFTSVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVFSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSLPHPHPHHISKEEWVICRIFHKSGEKRTPLVQVQGHSDASSSPTKNSLPPLLASPTCFTLELECQSQQSPVLIHHHQDQNHLSHSHPYLFPLHASPQLTNARNHPSFSDLFFKPLHNSQQNCIFKAKEKTAPKVVKTEEATAFYQYHLLGDANNLRVNQNPSNFPNPFPDVEVDAGLMAFSGGPNAEVRDMSTSTAFNRVGLQQVIDAAHIGIDSWPLPQHV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0082 376 ProSiteProfiles NAC domain profile. 22 176 IPR003441 GO:0003677|GO:0006355
Pvu9g0082 376 SUPERFAMILY NAC domain 17 176 IPR036093 GO:0003677|GO:0006355
Pvu9g0082 376 Gene3D NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Pvu9g0082 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3-LIKE 10 316 - -
Pvu9g0082 376 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Pvu9g0082 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0082 Pvu-Chr9 1241267 1243960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0082 1 182 NAC Transcription Factor Family AT1G76420 74.176 5.41e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu9g0082 NAM 7.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0082 - - gmx:100780313 553.903