Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0076 ATGACTCGTCCCTTCAGATATTTAGGCGAGAGCAAGTCGTCTGACGACTCCTCCGCCGTTGTCGACTCCGACTTCGTCGTTATCCTCGCCGCCCTCCTCTGCGCGCTCATCTGCGTCCTTGGCCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGCTTCTCTTCTGCCTCCACTCCCCAGCCTCCTCCCGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTTCTCCGCTCCCTCCCCAAGCTCACCGCCAACGCCGAATCCGCCGTTAAATTCGCCGATTGCGCTATATGCCTCTCGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCACGTCAGCTGCATCGACGGCTGGCTCAGATCGCACTCTTCGTGTCCGTCGTGCCGTCAGATTCTGGTGATTTCTCGGTGTGACAAGTGCGGTGGGATCCCTGCTCCGTCGAGCTCAAGCTCCGCTCCCCCGCCGCAGCCGGAATCTGAGGCCAGATTCAAGGTAAGGGAGGATAACGGCAATAGGTTCTTGCCTTAA 558 0.6129 MTRPFRYLGESKSSDDSSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRFSSASTPQPPPAAANKGVKKKVLRSLPKLTANAESAVKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDGWLRSHSSCPSCRQILVISRCDKCGGIPAPSSSSSAPPPQPESEARFKVREDNGNRFLP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0076 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 177 - -
Pvu9g0076 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Pvu9g0076 185 Pfam Ring finger domain 96 139 IPR001841 -
Pvu9g0076 185 MobiDBLite consensus disorder prediction 154 185 - -
Pvu9g0076 185 MobiDBLite consensus disorder prediction 170 185 - -
Pvu9g0076 185 CDD RING-H2_PA-TM-RING 96 139 - -
Pvu9g0076 185 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Pvu9g0076 185 SMART ring_2 97 138 IPR001841 -
Pvu9g0076 185 SUPERFAMILY RING/U-box 78 145 - -
Pvu9g0076 185 PANTHER RING-H2 FINGER PROTEIN ATL8 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0076 Pvu-Chr9 1173795 1175038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0076 5 185 C3H Transcription Factor Family AT1G20823 63.918 1.24e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0076 - - gmx:100794614 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0076 9 1173795 1175038 Pvu9g0076 9 1173795 1175038 ECH