Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0067 ATGAATTTGTTTCGGGTAGTTTGTTGGGTAGTGTGGTGTTTGGGATTTGTTGGGGCTGCAAACGTGTCATCCTTGAGACCCTCCGTCGTTAACATTGGGGCAATCTTCAACATCGATTCCGTCCTTGGGAAAGTGGCTAAACTTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACACTAACATTCTACATGGAACTAAAATTGTTCTCACTATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCCCATATAATATCCCATGTTGCTAATGAACTACGGGTTCCTTTATTGTCATTTGCGGCAACAGACCCTACCCTCACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATTTGTACCAAATGAAGGCTGTAGCTGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGATATTACTAGTTTGCTTGTGAAAGTGGCACTGATGCAGTCTCGGGTCATTGTTCTACATGCTCAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTACCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCCTCTCTCCCTTCAGAGACAATGGATGTTCTCCAGGGAGTACTTGTTCTGCGCCAGCACACACCTGATTCAGATAGAAAAAGGGCATTTTTCTCTAGGTGGAACAAGTTGACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTATGCTTATGATTCTGTTTGGCTTGTTGCACGGGCCATTGATGCTTTTTTCAGTCAGGGTGGGGATCTTTCGTGTACTAATTACACAAGTTTAGGTGGTGAGAATAAGGGAGGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAAGAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAACCAGATCGATCTCTCGTTCATCCTGCCTATGACGTCCTTAATGTGGTTGGAACTGGGCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCTAAGCTACCTAATAGATCTAGTGCGAATCAGAAGCTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTCTCTCACCAGTGAAGGGAACTCAGATGTTCAATGGTTTTTGTGTCGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCTGTTCCTTACCGCTTTGTTCCATTTGGAGATGGACACAAAAATCCAAGCTACACAGAACTTGTCCACTTAATCACAACTGGTTACTTTGATGGTGCCATCGGTGATATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAACCATATGCATCATCGGGACTTGTTGTGGTGGCCCCATTCACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTACTCTTATGTGGATTGTGACTGCTACTTTCTTTCTTCTCATTGGGATAGTTATATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCCAGACAGCAAATTATAACCATGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTTCTCTTGGTCGGTTTGTGATGCTCATATGGCTATTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCGTATCAGTGGAATAGATAGCTTAAAGGCTAGTGATGAACCTATAGGATTCCAAGTGGGTTCATTTGCAGAACATTACCTGATTCAAGACATTGGAATTTCCAAATCTAGGCTTATTGCCCTAGGATCTCCAGAAGAATATGCTAAGGCCCTTCAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATCTTCTTATCAAGCCAGTGCACGTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCACGGGACTCCCCTTTGGCTGTGGATATGTCAACAGCCATTCTACAACTTTCTGAAACCGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATGCTGAAATCGACTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTATCATTTGCGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATTATATTCCAGTTATGGAAATCTCCTCCTTCTGAACCTGCCGCTTCTACTGCCTGCTCAATTTCTGGTCGTTTTCAAAGATTTCTTTCGCTCATTGATGCGAAAGAAGATTCATCAGGGAGTAAAGTAAAAAAGAGAGAAAGATCACTTGAAGATCCCCTGGGAAGGCACTCAAAGAAGGTACAACTACAAACAGAAATGGCTACCTAA 2757 0.4316 MNLFRVVCWVVWCLGFVGAANVSSLRPSVVNIGAIFNIDSVLGKVAKLTLEEAVKDVNADTNILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGDITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTDNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKRAFFSRWNKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFSQGGDLSCTNYTSLGGENKGGDLNLDAMSIFDNGTLLLKNILQSDFVGLSGRMKFEPDRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKLPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFLSPVKGTQMFNGFCVDVFTAALNLLPYAVPYRFVPFGDGHKNPSYTELVHLITTGYFDGAIGDIAIVTNRTRIVDFTQPYASSGLVVVAPFTKINSGGWAFLQPFTTLMWIVTATFFLLIGIVIWILEHRINDEFRGPPRQQIITMLWFSLSTLFFSHRENTMSSLGRFVMLIWLFVVLILTSSYTASLTSILTVQQLSSRISGIDSLKASDEPIGFQVGSFAEHYLIQDIGISKSRLIALGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFIICGIACFVALLLHFLQIIFQLWKSPPSEPAASTACSISGRFQRFLSLIDAKEDSSGSKVKKRERSLEDPLGRHSKKVQLQTEMAT* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0067 918 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Pvu9g0067 918 MobiDBLite consensus disorder prediction 886 908 - -
Pvu9g0067 918 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016021
Pvu9g0067 918 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016021
Pvu9g0067 918 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016021
Pvu9g0067 918 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016021
Pvu9g0067 918 Pfam Receptor family ligand binding region 50 404 IPR001828 -
Pvu9g0067 918 Gene3D - 460 574 - -
Pvu9g0067 918 SUPERFAMILY Periplasmic binding protein-like I 26 422 IPR028082 -
Pvu9g0067 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 911 - -
Pvu9g0067 918 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Pvu9g0067 918 PIRSF IGluLR_plant 1 917 IPR017103 -
Pvu9g0067 918 Pfam Bacterial extracellular solute-binding proteins, family 3 488 807 IPR001638 -
Pvu9g0067 918 Gene3D - 145 419 - -
Pvu9g0067 918 Gene3D - 575 705 - -
Pvu9g0067 918 MobiDBLite consensus disorder prediction 885 918 - -
Pvu9g0067 918 Gene3D - 49 394 - -
Pvu9g0067 918 PANTHER GLUTAMATE RECEPTOR 3.3 17 911 - -
Pvu9g0067 918 CDD PBP1_GABAb_receptor_plant 31 422 IPR044440 -
Pvu9g0067 918 CDD GluR_Plant 464 805 - -
Pvu9g0067 918 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Pvu9g0067 918 Gene3D - 755 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0067 Pvu-Chr9 1130669 1134989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0067 9 904 Ion Channels AT1G42540 63.696 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0067 K05387 - gmx:102661260 1620.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0067 9 1130669 1134989 Pvu9g0067 9 1130669 1134989 ECH