Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0050 ATGGCAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCTGTGCCTATGCTGTGTCTTAGGGAGCCTTTGCATAATTCGTATCCAGAGACACCAATTTTGCCCAGCAATATGACAGTGTATATGAACTCCGGTTCATATTCTGAAGCATTGCCCGGAAATTCTCAGCAGCAAAACAATTGCTTTGTGATTCCATCACCGTCAGTAGGTGCTTCAAATTCCACAGTTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCCAAATGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGAACCATTGCTCAAATTTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAACGAGGTCTACCAAAATGGCTCGTCTAGGGATGCGGGTACGAGACATTCTGAAAATTTTCCTCCTGTGTTACATGAAGCTGGTCATTATTTGAACAAAGCAGATTTTTCATTTCATGGAATTTCTAGTGCTGGAAGAACAGTTCCTAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTTACGGAACACATGAGAACTCCACGAAGAATTCGAAGGAGGGTGATGAGCATCTATTAAATGAACGGTCTTCTGTAAATGTTGTGCCAAATTCTCAAGCCTCAGCCAGTAACTCCTCTTGTGAGCTTTCACATACTGAAAAACAAGATCTGCAAAGGAAGTTAGCAAAGCTTCTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAAATGCAGAATGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACGGCCCTTGCTCTACAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATTAGTGGTCAAATTCGTGCAACACGAAAGAGACTTGGGGAGCATGATGCTTCTGGAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCATCAAGTCCGACAACAGAGGGCTATTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGCGCATGGCTTTTTGAGCATTTCCTTCATCCATATCCAAAGGATTCCGAGAAGACCATGCTAGCAAAACAGACGGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGCGGACATGGACTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGGTGATTCACAGCATTGTCAGAGTCCAATAGTAACTGATACAGATCACAGTGGTGGACAAGCTAAGGAGGACCTTGGATATGATCAGGTTCTTGATACAAAAATCATGGCATCCACTGGATTAACTAGTCTCATTAGTGGAGGTCATGAGGTTGAAACCGAACACGGGTCAGGAAAGCAGAATGGGGAGAAAAGGCCAAATTTGGATGATTGTGGTCTCTTCTCTGATAACATGGTTGTTCAGTCTGATGGAGCCACTAATGACAGGTTTGTAGCAGTTGGTCCAACGTGCCAAATGTCAGAGTTTGAGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTACAGTATTGTGAAGGAGGAAATTATTTGCCTGGTGAGACCCATCTCAGTTTGGTTTCCATGAGGGAAAATGGCATCTACAGCAGCGCAGCTGCAGATTCTACAGTTGGAGTACAGACAGCAGAACTTGAGTGCGTTGGTGCTGGAAACCAGCGACAAAGGTTCAGTTCACCTCATATGTTACATGATTTTGTGGTATGA 1938 0.435 MATYYPCSSNQRGAVPMLCLREPLHNSYPETPILPSNMTVYMNSGSYSEALPGNSQQQNNCFVIPSPSVGASNSTVEQQEILANIGGYPNGVHDFSAWREGRSEMNHCSNFDSFLGANPSLSANEVYQNGSSRDAGTRHSENFPPVLHEAGHYLNKADFSFHGISSAGRTVPSSKYLKAVQQLLDEVVDIRQAIKRPETRSYGTHENSTKNSKEGDEHLLNERSSVNVVPNSQASASNSSCELSHTEKQDLQRKLAKLLSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAISGQIRATRKRLGEHDASGSNKGVGMARLKYVDHQVRQQRAIQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKTMLAKQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDADMDSTSSSENVSKATKSDVKISNDTGDSQHCQSPIVTDTDHSGGQAKEDLGYDQVLDTKIMASTGLTSLISGGHEVETEHGSGKQNGEKRPNLDDCGLFSDNMVVQSDGATNDRFVAVGPTCQMSEFERFKSGSGVSLTLGLQYCEGGNYLPGETHLSLVSMRENGIYSSAAADSTVGVQTAELECVGAGNQRQRFSSPHMLHDFVV* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0050 645 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677|GO:0006355
Pvu9g0050 645 MobiDBLite consensus disorder prediction 223 245 - -
Pvu9g0050 645 MobiDBLite consensus disorder prediction 198 217 - -
Pvu9g0050 645 CDD homeodomain 365 426 IPR001356 GO:0003677
Pvu9g0050 645 MobiDBLite consensus disorder prediction 437 485 - -
Pvu9g0050 645 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 594 - -
Pvu9g0050 645 ProSiteProfiles 'Homeobox' domain profile. 362 425 IPR001356 GO:0003677
Pvu9g0050 645 Gene3D - 361 439 - -
Pvu9g0050 645 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 137 594 - -
Pvu9g0050 645 Coils Coil 248 268 - -
Pvu9g0050 645 MobiDBLite consensus disorder prediction 437 478 - -
Pvu9g0050 645 SUPERFAMILY Homeodomain-like 366 431 IPR009057 -
Pvu9g0050 645 SMART prehox3 165 316 IPR006563 -
Pvu9g0050 645 MobiDBLite consensus disorder prediction 224 245 - -
Pvu9g0050 645 Pfam Associated with HOX 171 315 IPR006563 -
Pvu9g0050 645 SMART HOX_1 365 429 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0050 Pvu-Chr9 877380 880404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0050 27 645 Homeobox Transcription Factor Family AT4G34610 40.188 5.49e-124 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu9g0050 POX 6.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0050 - - vra:111240485 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0050 9 877380 880404 Pvu9g0050 9 877380 880404 ECH