Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0039 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAATGGGAGAGTTCATCGTTCAGCAAACTAACTGCGAGGATTTTTTCTGTCTCAACGCCAACACCGTCGTCGGAGGCGACGATTTCTTCGTCGACGACCTATTTGACTTCTCAGATGGCTCTCTTCACTACGAACAACAAGATTGCGTCGAAGAAAAAAAAAGTTTATCGGCTTCCTCGCAGTCAAAGGACCAAGGAGAAGACGATAGCAACTCCAATTCCACCGGCGCTTCCTATGATTCACTTTTCTCTGCCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTTGACGATTCCCTCCCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGTGAACCGGCGGGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGCGAAATGAAAATAACGACCAAGGCGAGAACTGTACGGAATAGAAAGCCCAACGCTCGCGTTTGGTCGTTGGGCCCGTTGCTCTCGCTCCCGTCCTCGCCGTCTTCGTGCTCTTCTTCTGTGACGGAGCCACCCGCGAAGAAGCAGAAGAAGCGGGCCGAGGCCCAGCCTGTTGGGGCCCAGGTTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCGCAGTGGAGGACGGGCCCCCTGGGCGCCAAAACCCTCTGCAACGCGTGCGGGGTTCGGTACAAATCGGGCCGGCTTTTTTCGGAGTACAGACCGGCTTGCAGCCCAACCTTCTGCAGCGATATTCACTCCAATAGTCACCGGAAAGTGTTGGAGATTCGCAAGAAGAAAGAGGTGGCTGGGCCGGACACCGGTTCAGCCCAGGCCCAAATGGTTCCCACCTGCTGA 903 0.5515 MEVAVAKALKPSLMGEFIVQQTNCEDFFCLNANTVVGGDDFFVDDLFDFSDGSLHYEQQDCVEEKKSLSASSQSKDQGEDDSNSNSTGASYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEVNRRVEPEPSAKKTPRFPCEMKITTKARTVRNRKPNARVWSLGPLLSLPSSPSSCSSSVTEPPAKKQKKRAEAQPVGAQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKEVAGPDTGSAQAQMVPTC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0039 300 MobiDBLite consensus disorder prediction 65 89 - -
Pvu9g0039 300 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Pvu9g0039 300 PANTHER GATA TRANSCRIPTION FACTOR 1 300 - -
Pvu9g0039 300 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Pvu9g0039 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 272 - -
Pvu9g0039 300 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Pvu9g0039 300 PIRSF Txn_fac_GATA_plant 15 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu9g0039 300 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Pvu9g0039 300 MobiDBLite consensus disorder prediction 181 210 - -
Pvu9g0039 300 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
Pvu9g0039 300 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Pvu9g0039 300 MobiDBLite consensus disorder prediction 181 195 - -
Pvu9g0039 300 PANTHER GATA TRANSCRIPTION FACTOR 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0039 Pvu-Chr9 717658 719313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0039 40 287 C2C2-Gata Transcription Factor Family AT4G36240 43.346 1.49e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g0039 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0039 - - gmx:100780311 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0039 9 717658 719313 Pvu9g0039 9 717658 719313 ECH
Pvu9g0039 9 717658 719313 Pvu11g0407 11 3424122 3425804 ECH