Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0034 ATGGATGCCGACGATGACGAAGCTCCACTCCAACCACACTCTGATGCACAATGCCACACCGACGCCTACGCAGCCGTGGGAGACCCTGAGCCCGATACCGTAGGGGAGCTGAGCGCCGCCGCTGCTCAAGAGGTTGTCGCTGTTGAACCCGATGCGACGATGGAGACGGCGGTTGAATCCGACGCGGGCGTTGGGACGCATGCGATGGACGAGGTAATTGAGGAGAAGGGGACTGAGGTAACCGATGTAGACGACATGGCTTTGGAGATGGAGAACGTGGAAGAGGAAGCGAATTTGACAATTGATGCGGAAGAGGACGAAATTGGGGACGAAGACGCAAATGAAGACGCTTTGATGGAAGAAGAAGAAGAAGATGAACAGCAACAAGGAGAGGAGGAGGAAGAGGAGGAAGAAAAACAGCAACAAGGAGTGGAGGAGGAAGAAGAGGAACAGCAACAAGCTGAAGAGGATGAGGAAGAAGAAGAAGAGGACGAAGGGGAAGAAGAACAGCAACAAGGAGAAGAAGAAGATGCTGATGCTGATGCTGGAATGACAAAAACAGAAGATACAGAGGAGAAGGAGGAGAAGAGTGTGAGTGGTGGAAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAAGCTACAGGGAGAGTTGCGTCCAGGAAAAAGACGGAAGAAGATGTTTGTTTCATTTGCTTCGATGGGGGTGATCTTGTGCTTTGTGACCGCAGGGGATGTCCCAAGGCATACCATCCTTCCTGCGTTAATCGTGATGAGGCTTTCTTTCGAGCCAAGGGAAAATGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTCAGGGGAAACAAGGGATTTTGTGAGACATGCATGAGAACCGTAATGTTGATTGAACAGAATGTGCAGGGGAGCAATGTGGGACAAATAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTGTCTCTAACATTTGATGAAATCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCACCGGATGAACTTTTTGATGCCCCTAACGATAGAGGATCAGATTCTGATAGCTCCTATGAAAATGATTCAAATCGTTCTAAAAGAAGAAAGGCAAAGAAACGGGGTAAGTCCCGTTCCAAAGAAGGAAACTTGCATGGTGCAGTCACAGTGTCTGGTGCTGATGGGCCATCTGGAAATGACAGCGCGGAGTGGGCTTCAAAAGAGCTTCTGGAGTTTGTTATGCACATGAGAAATGGAGATAAGTCTGTATTATCTCAGTTTGATGTGCAGGCTCTTTTGCTTGAGTATATTAAAAGAAATAAGCTTCGAGATCCGCGCCGAAAAAGTCAGATTATATGTGATGCAAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGGCATTTTGAGATGTTAAAGCTTCTTGAGTCCCATTTCCTTCTAAAAGAGGATTCTCAGGCCGAAGATATGCAGGGAAGTGTTGTTGACACAGAAGTTAGTCATTTGGAAGGAGATGGGAATCCCAATTCGTATATGAAAGCTGGCAAAGATAAGAGGCGTAAAAATCGCAAAAAGGGTGATGAGAGAGGACTTCAAACTAACGTTGATGATTATGCAGCTATTGATAACCATAATATTACTTTAATTTATCTACGACGTAATTTGGTTGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTCCGCCAAAGCATAAAGTGTGGTCTCATAAATCGTCTGACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGCTGTTAGAGTAAAAGATTGGCTAGAGACTGAGATAGTGCGGTTGAGTCATCTCCGTGATAGAGCCAGTGAGAAAGGACGCCGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAGACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACATGTGGATCCGAACATGGATCCCAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATGATAAAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAGGAGGGGGAGAGATATTGTTTCTCCAAGAAGTGTTTCTGTTTCAAATGATTCTTGGAGTGGAACGAGGAATTATTCCAATGCGAATCAGGAACTCAGCAGAAATTTGTCCAGTAAGGGATTTTCAGTCAAAGGTGAAAATGCTTCTAATGTTAATGAGGTACTGAATGATACTCATTTGCACCCGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAGCTTGGAGAGTGGTGCTAAAAGTAACCAATCATTGGTAACATCTGATTCTTTCTCTACTGCTGTATTGGAAGCTTCTGCAACACCATCTTCTGCCGGAATAACTCCTTCAGCTTTGAAAATTAATGAAACTGAAAAGACATGGCATTACCAGGATCCTTCCGGAAAAGTTCAGGGACCATTTTCTATGGTACAGTTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACAACTGAGAAGCAAGATGATTCTATACTCGTAACAGATGCTTTGGCAGGGAACTTTTCTAAAGAACCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACTCTAGGAAGTCTGCACAAGGTACGGAAGGTCAAGTTGGAGAAAGACCATCATTTGATCAAAATAGTGGATCTTTAAATTCACATAGTACACTGGGTTCTCCGGGACAAACAACGGGCGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAATAGAACATCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTAGTAGAAATGAAGCAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGACTAAGGTGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGCAATCATGGAGGTTTGCAGGCCTCTTTGGTAGTGCACGCAGAGCATGCTGTGCAGAATCCAGAAAAAGGCTCTTCACAACCTGGTATTAGTTCAGCATCTATAGATAATTCTAAGTTACATCCTCAACCGGCAGCAGTGGCACCTGTTCTGCCTTCAGGGGTTGACCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCGTAGCCACAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACTGCAGGCTTGGGGAGGTGTATCATCCCAACCAAATCCTGCTGCTATGCCTGCCCAGCCAGCATCCCATGGCCCCTGGGTTGATGCCTCATCTGTGCAGAACACTGCCTCGTTTAACACTGGGAATCCATCTCCCAGTTTACCCACACCTGGATTTCTGGGCATGAATACCTCCGAGCCTTGGAGACCACCTGCTTCTAGTAGTCAGCCAAACATCACAGCTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGTGTTGTACCTGCCAATATGAACGCAACCTGGATGCCTACGCAGGTGCCAGCACCAGGAAATTCAAATCCAGGATGGGCTGCTCCTAATCAGGGGCTACCTCCTAGTCAGGGGCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGTTGGGTTGGATCTGGTCAGGGTCTAGCACCTGGAAATGCCAATCCTGTTTGGGTTCCACCAGCTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACCGGTTCCCAAACCAAGGGGATCGTGGTACACACGGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGAGGAGCTCCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGACTCTTGTGATTTTCTACACACTTAG 4446 0.4552 MDADDDEAPLQPHSDAQCHTDAYAAVGDPEPDTVGELSAAAAQEVVAVEPDATMETAVESDAGVGTHAMDEVIEEKGTEVTDVDDMALEMENVEEEANLTIDAEEDEIGDEDANEDALMEEEEEDEQQQGEEEEEEEEKQQQGVEEEEEEQQQAEEDEEEEEEDEGEEEQQQGEEEDADADAGMTKTEDTEEKEEKSVSGGKRKRGAGKNAKATGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQAKNPWKGSDMLHSKEESPDELFDAPNDRGSDSDSSYENDSNRSKRRKAKKRGKSRSKEGNLHGAVTVSGADGPSGNDSAEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDMQGSVVDTEVSHLEGDGNPNSYMKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNITLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRRENYMRPRGSTSFGRRGRDIVSPRSVSVSNDSWSGTRNYSNANQELSRNLSSKGFSVKGENASNVNEVLNDTHLHPGRDRESQLSNSWERQKLSSSLESGAKSNQSLVTSDSFSTAVLEASATPSSAGITPSALKINETEKTWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYSRKSAQGTEGQVGERPSFDQNSGSLNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGSRNEATNLPSPTPQTTPGVTKVQAFENKWSPTPVQLPGSLIGNSFPGNHGGLQASLVVHAEHAVQNPEKGSSQPGISSASIDNSKLHPQPAAVAPVLPSGVDLKMAGTNMQNQVVRSHNSHAEAQGWGSAGVPKPELQAWGGVSSQPNPAAMPAQPASHGPWVDASSVQNTASFNTGNPSPSLPTPGFLGMNTSEPWRPPASSSQPNITAPSPAPPNMPWGMGMPGNQNMNWGGVVPANMNATWMPTQVPAPGNSNPGWAAPNQGLPPSQGLPPVNAVGWVGPGQGRSHVNVNAGWVGSGQGLAPGNANPVWVPPAGNPGMWGSEQSHNGDRFPNQGDRGTHGRDSGYGGKSWNRQSSFGRGAPSRPPFGGQRGVCKYHESGHCRKGDSCDFLHT* 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0034 1481 SUPERFAMILY FYVE/PHD zinc finger 223 278 IPR011011 -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 879 897 - -
Pvu9g0034 1481 Pfam SWIB/MDM2 domain 449 522 IPR003121 -
Pvu9g0034 1481 SMART PHD_3 227 273 IPR001965 -
Pvu9g0034 1481 PANTHER UNCHARACTERIZED 48 1481 - -
Pvu9g0034 1481 SUPERFAMILY Plus3-like 584 712 IPR036128 GO:0003677
Pvu9g0034 1481 SMART swib_2 456 527 IPR019835 -
Pvu9g0034 1481 ProSiteProfiles Zinc finger PHD-type profile. 225 291 IPR019787 -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 372 443 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1082 1104 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1012 1104 - -
Pvu9g0034 1481 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 48 1481 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1248 1275 - -
Pvu9g0034 1481 Gene3D SWIB/MDM2 domain 437 532 IPR036885 -
Pvu9g0034 1481 Gene3D - 585 713 IPR036128 GO:0003677
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 864 878 - -
Pvu9g0034 1481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 319 IPR013083 -
Pvu9g0034 1481 SMART gyf_5 933 988 IPR003169 GO:0005515
Pvu9g0034 1481 ProSiteProfiles Zinc finger C3H1-type profile. 1456 1481 IPR000571 GO:0046872
Pvu9g0034 1481 Gene3D - 934 992 IPR035445 -
Pvu9g0034 1481 Coils Coil 87 107 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 92 178 - -
Pvu9g0034 1481 SMART rtf1 583 693 IPR004343 GO:0003677
Pvu9g0034 1481 ProSiteProfiles Plus3 domain profile. 583 716 IPR004343 GO:0003677
Pvu9g0034 1481 SUPERFAMILY SWIB/MDM2 domain 445 523 IPR036885 -
Pvu9g0034 1481 Pfam GYF domain 935 975 IPR003169 GO:0005515
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 846 862 - -
Pvu9g0034 1481 Coils Coil 118 176 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 846 897 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 374 409 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1152 1171 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 759 777 - -
Pvu9g0034 1481 ProSiteProfiles GYF domain profile. 932 986 IPR003169 GO:0005515
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 92 216 - -
Pvu9g0034 1481 ProSiteProfiles SWIB/MDM2 domain profile. 441 524 IPR003121 -
Pvu9g0034 1481 CDD GYF 932 987 IPR003169 GO:0005515
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 179 202 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 541 574 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1151 1173 - -
Pvu9g0034 1481 SUPERFAMILY CCCH zinc finger 1459 1480 IPR036855 GO:0046872
Pvu9g0034 1481 Pfam Plus-3 domain 588 691 IPR004343 GO:0003677
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 815 832 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1012 1067 - -
Pvu9g0034 1481 CDD SWIB-MDM2_like 447 522 - -
Pvu9g0034 1481 CDD Bbox1 273 299 - -
Pvu9g0034 1481 SUPERFAMILY GYF domain 925 985 IPR035445 -
Pvu9g0034 1481 ProSitePatterns Zinc finger PHD-type signature. 228 288 IPR019786 -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1408 1463 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 1227 1304 - -
Pvu9g0034 1481 MobiDBLite consensus disorder prediction 759 832 - -
Pvu9g0034 1481 CDD PHD5_NSD 227 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0034 Pvu-Chr9 601860 615586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0034 225 298 PHD Transcription Factor Family AT4G14920 39.189 1.22e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu9g0034 Plus-3 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0034 - - pvu:PHAVU_009G003300g 2594.3