Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0024 ATGGGCGAGGAGGAACGTGACGAAGGAGGTTCTGTCCCGAGGGTTGTTGCCGCCGACCAAACCCCGCAGGAACTCGTGTCCAGGGCCATAGCCCCCGTTAAGAAGGAATTCCTACGCCCACCTCCGGTTCGGTCTTCCGCTCCAAACGACGACGTTTCCATTCCCAACGAAAACAGAACCTCCGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCAAAAAACCTATGTCCCGTAATTGCGAAGACGGGTGATGTTAGTTCGTGTCCTTATAAAGACAAGTGTCGGTTCAGCCATGATTTGGAAGGCTTCGAGGCGCAGAAACCGTCTGATCTAGAAGGACAATGCCCGTTCGTTAAATCTGGGGGCTCTTGCCCTTATGGCTTAGCGTGTAGATTTTCGAGCACGCATGAAGGTGGTGTGCCTTCTGGCGATTGTAATGGCCTGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATGCCAAACTCAAAAGTCTCAGCCTTCTGGGACCGTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTGTGATCATTCTGATGACAGTGGCTCTTGTGTTGTTACGTCTGACTCAGGTTCTAAGTTGGAATGCCCTGCTGAAGTTATGAAAGATGATGATAATGGCATAGATGGAAAATGTGAATCTGATGAACGTTGTCCCCTGAAGCGAAGAAAAACTGAAGAAAATTGCAGTCCTAAAGAGGCAGCAAATGAAGAGAATTGTGGTCCTATGGAGGCAGAAAATGAAGGTGTTACAGAGAAAATTGTTGAAAGAAGTTGCACAAAATCTGAAGCTGATGATATAGTCCCAGAAACTGATTTAAGCACAAAATCTGAAGCTGAGGATATAGTCCCAGAAACTGATTTAAGCCTGAAGCTTCACTCACGTGAGAAGAAGCTTATTGATTTTAGAGGGAAGTTGTATCTGGCACCGTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGTGCTGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGCACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATAGTTGTGAACAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAATGCGGATGAAAAGTATAGTAGAAGTAGCTTCGGGTACAGTGGACAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGTGCCGTGACAATACATGGTAGATCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATATCAGTGTGCCAGGAAAGCCCCTACTACGTTGCCAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTGGAATGGAACAATCACAGAACTGAATGTCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAGGAACAAAGGAATTGGGACATCAGTTCTGGCGAGCGACTAAATATTCTAAAGGATTTTGTAAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACCACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTCAGGTATGTACCTGTTGGTCTTTTGGATGTGGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCGGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCCGATGGCTTTACATTTGCACCAAAGCATAAATCAAACGCTTACGATAGAGCTGAAAATGGTTAA 2109 0.4462 MGEEERDEGGSVPRVVAADQTPQELVSRAIAPVKKEFLRPPPVRSSAPNDDVSIPNENRTSVLAKEKKSKRQLKRERRQEQKSAKNLCPVIAKTGDVSSCPYKDKCRFSHDLEGFEAQKPSDLEGQCPFVKSGGSCPYGLACRFSSTHEGGVPSGDCNGLKNSSEVNGLSKDVQKLLWKNKMSFSKADAKLKSLSLLGPSKSKRNDLENKEGVDTGSNKCDHSDDSGSCVVTSDSGSKLECPAEVMKDDDNGIDGKCESDERCPLKRRKTEENCSPKEAANEENCGPMEAENEGVTEKIVERSCTKSEADDIVPETDLSTKSEAEDIVPETDLSLKLHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVEWNNHRTECPELATDMIARGALIKPWIFTEIKEQRNWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTFRYVPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0024 702 Pfam Dihydrouridine synthase (Dus) 353 588 IPR035587 -
Pvu9g0024 702 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 30 702 - -
Pvu9g0024 702 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 30 702 - -
Pvu9g0024 702 MobiDBLite consensus disorder prediction 198 226 - -
Pvu9g0024 702 Coils Coil 63 83 - -
Pvu9g0024 702 ProSitePatterns Uncharacterized protein family UPF0034 signature. 434 452 IPR018517 GO:0008033|GO:0017150|GO:0050660
Pvu9g0024 702 Gene3D - 77 152 - -
Pvu9g0024 702 MobiDBLite consensus disorder prediction 203 221 - -
Pvu9g0024 702 MobiDBLite consensus disorder prediction 1 86 - -
Pvu9g0024 702 CDD DUS_like_FMN 350 584 IPR035587 -
Pvu9g0024 702 Gene3D Aldolase class I 346 588 IPR013785 -
Pvu9g0024 702 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Pvu9g0024 702 SUPERFAMILY FMN-linked oxidoreductases 350 663 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu9g0024 Dus 5.6e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0024 K05544 - gmx:100783494 1183.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0024 9 448636 454344 Pvu9g0024 9 448636 454344 ECH