Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g0012 ATGAAGAACCCCGATCTTAGAAGCTCCAAGGTCCAATCACCAAATCCCGTTCAGTTCAACTCCAAGACGCCGGAGAAACCACCGCAGCGGATCCGAAACCGTGGCGTGTCGCTCTCCGTCTCAGACATTAAAAAAGTCGGCAAGGATTTGCAGGATCGGAAGCAACGCGGCGAAACGACGTCGTCACCGTCGCAGAGCAAGAGTGTGAAGAGACAGATCTCACTGTGGCCTTCTTCTCCGAGTAAATCTAAGATTACTGACGATGATTCCTCCAAGCTTCCCGAAAAATATGAGATTTTGGATCGGTTCTTCGATCGCTTGGACACTTTAATTTCAATGTTCCGTCTGAAAGGGAAGATTCCATCTTTTACGGAAATCAGTTCTAGAATTGAATCTTTAACAGACAGGAGGTTTACTCATGGTCATCTGGCGCAGTTGAAATTTATCTTGCCTGATGCTATTGTTTTAAAGAAGGTTTCAGTGCATGATGAACGGACTAGTTGTATGAAGCCGGATATTCACGTCTCTTTAGTCCGTGAGACAGTAGATTCTGATGTGAAGTTGTCCCCTGAACATGCGAGAGTGTCATTGAAGAAGTTGTTTCACGCACGGCTCAGAGATTTTTGGGAATCTCATCCTGAGGGAGATGAAATTCCAGAAGGAACTCTGCCTGAGCCATTCAATCGTCCAAAGAAAGCCAATATTTTAGACACGTTTGACACTCGTCTCCGAACAAAATTATCACTCTGCATGCGCTATGATGACATTGTCAATAATGCAGAGTCTGTTAACATAGATGAACAAATGTCTGTACCAGTAGAAACATCAGTTGAATTGTCTAATCAGCATCTGGCAGCAGCTTCTCACTTTGCTCCATCCTTTAGAGCAAGATTTTCTTTGAAATTTAAACAAAATGGAGCGGATAATGTACAGCAAAATTCTCAAGTAGATTCGGTACAAAATTGTCCAACAATTTATGCCTCTCTCGAATCATGCAGTTCTCCCGCCCCCGCTAATACTCCAAGCAAAATAGTTGACCACACAGAATACGAAGATGGGTCTCTCTATAGTATTGATGTCATGTCAACTCCAGCAAGAAAAACCATAGTGTACATAGAAAACAAAGATGGGTCTCCCAAGAGTATTGATGCCATGTCAACTCAAGCAGATAAAATCGCTGAATGCACAGAAAACAAAGATGTTTCTCTCAAGAGCATTGATGCCATGTCAACTCCAGTTAAACATGTTTCTACTCCAATTAGCATTGATGCCATGTCAACTCCAGTTAAACATGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGATGTCTTATGAGCCCAGATGACCACCCAATCAGTTCTTTGAACAAGTTAGCTAGACGTCCATCTCGCTCAAGGTCATTGAGATTTGACACTCCAGTGAATAATAAGGAGGTCGTGAATGAAGACAATGCCGGTGGCTTACCAATAGATGATGATGTTTTTGACATTCTTCCAGAAAATCTTGTCCAATCGATTAGAGAAAAGGAAAGAATGGCAATGGAGGAAACAGACCCAGCTATCACTCAAGCAAAGAAACGGAAAAAATATATAGCTAACCTCCCTAAGCTCTTTGACATGATTCACCTCTTGCTTCGACAGCGGAATTGTATTACTAAAGCCGAGCTTGTAAGCAAGATAATAGCAAGCCACAGTGATATTGTTGACAGAAGTGAAGTTGAAGACCAGCTAGATTTGTTACAAGAAGTAACACCAGAATGGATTTCTGAGAAGCAGATCTCTAGTGGGGATTTGCTATTTTTCATAAACAAAATGTTGAGCCCTGAAACCATTCGAGCATCTCTTGAAGAAACGGCATAG 1884 0.422 MKNPDLRSSKVQSPNPVQFNSKTPEKPPQRIRNRGVSLSVSDIKKVGKDLQDRKQRGETTSSPSQSKSVKRQISLWPSSPSKSKITDDDSSKLPEKYEILDRFFDRLDTLISMFRLKGKIPSFTEISSRIESLTDRRFTHGHLAQLKFILPDAIVLKKVSVHDERTSCMKPDIHVSLVRETVDSDVKLSPEHARVSLKKLFHARLRDFWESHPEGDEIPEGTLPEPFNRPKKANILDTFDTRLRTKLSLCMRYDDIVNNAESVNIDEQMSVPVETSVELSNQHLAAASHFAPSFRARFSLKFKQNGADNVQQNSQVDSVQNCPTIYASLESCSSPAPANTPSKIVDHTEYEDGSLYSIDVMSTPARKTIVYIENKDGSPKSIDAMSTQADKIAECTENKDVSLKSIDAMSTPVKHVSTPISIDAMSTPVKHVSTPIRLMSATPALRSPKRCLMSPDDHPISSLNKLARRPSRSRSLRFDTPVNNKEVVNEDNAGGLPIDDDVFDILPENLVQSIREKERMAMEETDPAITQAKKRKKYIANLPKLFDMIHLLLRQRNCITKAELVSKIIASHSDIVDRSEVEDQLDLLQEVTPEWISEKQISSGDLLFFINKMLSPETIRASLEETA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g0012 627 Gene3D - 500 627 IPR038090 -
Pvu9g0012 627 SUPERFAMILY "Winged helix" DNA-binding domain 89 227 IPR036390 -
Pvu9g0012 627 CDD Cdt1_c 505 624 IPR032054 -
Pvu9g0012 627 MobiDBLite consensus disorder prediction 1 26 - -
Pvu9g0012 627 PANTHER DNA REPLICATION FACTOR CDT1 11 626 IPR045173 GO:0003677|GO:0030174|GO:0071163
Pvu9g0012 627 MobiDBLite consensus disorder prediction 1 91 - -
Pvu9g0012 627 CDD Cdt1_m 92 232 IPR014939 -
Pvu9g0012 627 Pfam DNA replication factor Cdt1 C-terminal domain 510 601 IPR032054 -
Pvu9g0012 627 SMART CDT1_2 93 225 IPR014939 -
Pvu9g0012 627 MobiDBLite consensus disorder prediction 57 84 - -
Pvu9g0012 627 Pfam DNA replication factor CDT1 like 93 165 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g0012 Pvu-Chr9 344967 348521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g0012 402 625 Core DNA Replication Machinery Family AT2G31270 46.988 6.53e-49 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g0012 K10727 - gmx:100778818 692.575