Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g3020 ATGGTTGGCATAGGATGCATGGCGGGAGTAGGAGTTTATCACCCCAGCTGGCTGCATAATCGAATTCGAATTATCTCTTCTAAATCTGAAGAAGAAGCAGTAAAAGTAAAACGGTGGTGCTCCTTGTTCTCTGTTTCTGGATACGAGACTCGTCATCGGTGCAGGCCCAGGCCCAGGCGCCCGTGTTGTTTGCCTGAGAGTAGAGACGGTGGGGAGGAGGGAAGCTCTACTTGGGAGCGACTAGAGTTAGAGTGGAAGCTCCTCAGCAGAAGGATTGGAGATTCCGGAATATTTTCTTCGTGTTTGGTCGGTCTCCTCACCGGCGTCGCTGTCGTGCTCTTCAATTATGCTGTCCATGAAATTCGTGATTTGTTCTGGGATGGGATTCCCAATCGAGGCGCCTCATGGTTGAGAGAAGCGCCGATTGAGACAACATGGGCACGTGTAGTACTAGTGCCTGCTTTCGGAGGCGCCACCGTGTCTGTGCTGAACCTCCTTCGTACACGTTTTGATTCCTCTCTCCAACAAGATCCTTTACTCCGAACACCTTCTGCCTACCTCAAGTCTGCTTCCCGCCCTTTTCTAAAGGCCATGGCAGCTTCTGTTACTTTAGGCACCGGCAATTCCTTGGGTCCGGAGGGTCCCAGCGTCGACATTGGCACTTCCATTGCCAAAGGCCTCGGTCCTTTCTTTCACAACAATGGAAAGAGTTCCGGCAGAATGCTCTCCCTTCTCGCTTCTGGATCTGCCGCTGGCCTCTCTGCCGGTTTCAATGCTGCTGTTGCCGGTTGCTTTTTTGCTGTCGAGTCTGTCTTGTGGCCATCGCCTGCAAATGCATCTTTACCACTTACAAATAATACTTCCATGGTCATACTAAGTGCTGTCATAGCTTCTGTTGTTTCTGAGATTGGCCTTGGCTCTCAACCAGCCTTTAAAGTTCCAGATTATGACTTCCGGTCTCCCGGTGAGCTCCCGCTGTATCTATTGCTGGGTATTTTATGTGGCCTGGTGTCATTGGCCCTATCTAGGTGTACGTCATATATGTTGACTATTGTTGACAATCTGCACAAGGCCACTGGCATTCCAAGAGCTTCATTCCCTTTATTGGGAGGCTTATCGGTTGGGTTGATAGCATTGATATATCCTGAAATCCTCTACTGGGGTTTTGAGAATGTTGACATTTTATTAGAATCTCGGCCATTTGTTAAAGGCCTTTCCACTGATCTATTGCTTCAGCTAATAGCCGTCAAGATAGTTGCAACTTCTCTGTGCAGGGCTTCTGGATTAGTGGGGGGGTATTATGCCCCGTCTCTCTTTATTGGTGGTGCAACTGGGATGGCTTATGGAAAATTAATTAATTTTGCTTTTGCTGAGTCTAATCCCATGATTAACCTCTCTGTGTTGGAAGTGGCATCACCACAAGCTTATGGCCTGGTTGGAATGGCTGCAACTCTTGCAGGAGTTTGTCAAGTGCCACTTACTGCAGTCTTGCTTCTGTTTGAATTAACACAGGACTATCGGATTGTTCTGCCACTGCTTGGAGCTGTAGGGTTGTCTTCGTGGATTTCATCTGTACAGACAAAAAGAGATGACAGAGGGGCAAAAAAGGTTGAATTGGAAAATTCAAATTCTACTTCACTTTCTGAAATATCCTCTCCTAGTTCAATTGAGTCATCTGCTGGCAATACCTTTGCTGCGCCATATATGACTAATTTTTGTCAAGTGGAAAGTTCTCTTTGTGTAGAGGATGATACTGTTGAAACAACATATATTGTAAGGAAAACATTTGTTTCAGAAGCCATGAAGACGAGATACGTGACGGTTTCAATGTGCACACTACTTACAGAAGTAATAGATCTCATGATTGCAGAGAAACAGTCCTGTGCAGTAATTGTTGATACTGATGATACATTAATCGGTTTCTTGACACTTAGAGACATTCAAGAGTATGGTAAATTTGCAAAAGCAAGAAGCAAAAAACACAAGGGGCTTTTAGTTTCTGAATTATGCCTTTTAGATGGAGAAATATGCAACGTACCATGGACAGCTACACCTGACATGGAACTTCTTTATGCTCAAATGATTATGAAGGAGCGCGGATTCAATCAAGTTCCAGTCGTGAGGAATATCTATGAAAGAACATATCCAGTTGGCATTATAGACCCTGAGAGTATCAGTCTAACATGCAGTGCTTTGGCCACCAGACAAACCCTCAGCTAA 2220 0.455 MVGIGCMAGVGVYHPSWLHNRIRIISSKSEEEAVKVKRWCSLFSVSGYETRHRCRPRPRRPCCLPESRDGGEEGSSTWERLELEWKLLSRRIGDSGIFSSCLVGLLTGVAVVLFNYAVHEIRDLFWDGIPNRGASWLREAPIETTWARVVLVPAFGGATVSVLNLLRTRFDSSLQQDPLLRTPSAYLKSASRPFLKAMAASVTLGTGNSLGPEGPSVDIGTSIAKGLGPFFHNNGKSSGRMLSLLASGSAAGLSAGFNAAVAGCFFAVESVLWPSPANASLPLTNNTSMVILSAVIASVVSEIGLGSQPAFKVPDYDFRSPGELPLYLLLGILCGLVSLALSRCTSYMLTIVDNLHKATGIPRASFPLLGGLSVGLIALIYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKIVATSLCRASGLVGGYYAPSLFIGGATGMAYGKLINFAFAESNPMINLSVLEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRDDRGAKKVELENSNSTSLSEISSPSSIESSAGNTFAAPYMTNFCQVESSLCVEDDTVETTYIVRKTFVSEAMKTRYVTVSMCTLLTEVIDLMIAEKQSCAVIVDTDDTLIGFLTLRDIQEYGKFAKARSKKHKGLLVSELCLLDGEICNVPWTATPDMELLYAQMIMKERGFNQVPVVRNIYERTYPVGIIDPESISLTCSALATRQTLS* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g3020 739 CDD CBS_pair_voltage-gated_CLC_euk_bac 601 726 - -
Pvu8g3020 739 Gene3D - 580 727 IPR046342 -
Pvu8g3020 739 ProSiteProfiles CBS domain profile. 601 657 IPR000644 -
Pvu8g3020 739 SUPERFAMILY CBS-domain pair 591 725 IPR046342 -
Pvu8g3020 739 Pfam CBS domain 597 649 IPR000644 -
Pvu8g3020 739 Gene3D Clc chloride channel 86 538 - -
Pvu8g3020 739 PRINTS Chloride channel signature 196 215 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu8g3020 739 PRINTS Chloride channel signature 250 269 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu8g3020 739 PRINTS Chloride channel signature 429 449 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu8g3020 739 PRINTS Chloride channel signature 474 490 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu8g3020 739 PRINTS Chloride channel signature 492 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu8g3020 739 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 94 730 - -
Pvu8g3020 739 SUPERFAMILY Clc chloride channel 85 526 IPR014743 -
Pvu8g3020 739 SMART cbs_1 679 730 IPR000644 -
Pvu8g3020 739 SMART cbs_1 604 652 IPR000644 -
Pvu8g3020 739 CDD Voltage_gated_ClC 104 520 - -
Pvu8g3020 739 Pfam Voltage gated chloride channel 189 523 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g3020 Pvu-Chr8 59615811 59622008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g3020 100 271 Ion Channels AT3G27170 31.053 7.19e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g3020 - - gmx:100812959 1143.64