Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g3016 ATGGGCAACACATGCCGCGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCCTTTCTGATCGCCCCGACTCCGACCACCCCTCCTCAGCCAGACAAAATAATATCAATTCTTCAGAAAACAACACCAACAACATCGTTGTCAACAACAACAACAACAATAATCCACCCTTTGCCTCCAAGAAAGACTCCATCATGCGCCGCGGCCTTGACAACCAAGCTTACTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGCAAATTGGGACAGGGGCAATTCGGCACCACTTATTTATGCACCGAGAATTCTACTTCCAATGAATATGCCTGCAAATCCATCTCCAAACGGAAGTTGATTTCCAAGGAGGATGTTGAGGACGTTAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAGGAACATTGTCACCATTAAGGGGGCTTACGAGGATCCTCTCTATGTGCATATTGTCATGGAACTCTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTATACCGAGAGGAAGGCTGCGGAGTTGACCAAAATTATTGTTGGGGTTGTTGAGGCTTGCCATTCCCTTGGGGTCATGCATAGAGATCTCAAGCCTGAAAACTTTCTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTTTTCACTGATGTAGTCGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCAGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGAACCTTGGCCTCTAATATCCGACAGTGGAAAAGATCTGATCAGAAAGATGCTGTGTTCTCAGCCTTCAGAACGGTTGAGTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCACCTGACAGGGCAATAGACCCTGCTGTTCTTTCTCGTCTTAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCATTGCGGGTGATTGCTGAAAGTCTATCCGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACCGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATACGGGTCTACCCTTAAAGATATAGAAATACGTGATCTGATGGAAGCGGCTGATGTGGACAAAAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCCACAGTTCATCTCAACAAACTAGAACGTGAAGAACATCTTATTGCAGCATTCCAATATTTTGACAAGGATGGCAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGCTTTTCTTGAAGATATTATTAGAGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAATGTTGGAATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCATCAAGTGCTCAATAG 1689 0.4405 MGNTCRGSLKGKYIQGFSQPEDHSKRTTLSDRPDSDHPSSARQNNINSSENNTNNIVVNNNNNNNPPFASKKDSIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSNEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHRNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSEPWPLISDSGKDLIRKMLCSQPSERLSAHQVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDAFLEDIIREVDQDNDGRIDYGEFAAMMQKGNVGIGRRTMRNSLNLSMRDASSAQ* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g3016 562 MobiDBLite consensus disorder prediction 39 70 - -
Pvu8g3016 562 SUPERFAMILY Protein kinase-like (PK-like) 79 381 IPR011009 -
Pvu8g3016 562 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Pvu8g3016 562 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Pvu8g3016 562 SMART efh_1 476 504 IPR002048 GO:0005509
Pvu8g3016 562 SMART efh_1 510 538 IPR002048 GO:0005509
Pvu8g3016 562 SMART efh_1 440 468 IPR002048 GO:0005509
Pvu8g3016 562 SMART efh_1 404 432 IPR002048 GO:0005509
Pvu8g3016 562 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g3016 562 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Pvu8g3016 562 MobiDBLite consensus disorder prediction 1 73 - -
Pvu8g3016 562 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g3016 562 SUPERFAMILY EF-hand 381 538 IPR011992 -
Pvu8g3016 562 Gene3D Transferase(Phosphotransferase) domain 1 185 366 - -
Pvu8g3016 562 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g3016 562 Pfam EF-hand domain pair 405 465 IPR002048 GO:0005509
Pvu8g3016 562 Pfam EF-hand domain pair 475 536 IPR002048 GO:0005509
Pvu8g3016 562 MobiDBLite consensus disorder prediction 24 38 - -
Pvu8g3016 562 Gene3D - 367 539 - -
Pvu8g3016 562 PANTHER SERINE/THREONINE-PROTEIN KINASE 54 547 - -
Pvu8g3016 562 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Pvu8g3016 562 CDD STKc_CAMK 99 356 - -
Pvu8g3016 562 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Pvu8g3016 562 ProSitePatterns EF-hand calcium-binding domain. 519 531 IPR018247 -
Pvu8g3016 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Pvu8g3016 562 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 54 547 - -
Pvu8g3016 562 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Pvu8g3016 562 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Pvu8g3016 562 ProSiteProfiles EF-hand calcium-binding domain profile. 508 541 IPR002048 GO:0005509
Pvu8g3016 562 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g3016 Pvu-Chr8 59487940 59496832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g3016 1 558 EF-hand Containing Proteins AT2G17290 82.648 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu8g3016 Pkinase 7.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g3016 K13412 - gmx:100778173 1034.63