Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g3009 ATGGAATATGGTGGTGGGTTTGGGAGCTTGTGGGAGTGTGGTTCAGCGTGGGAAGAAGATTCGATCGAGGAGGTGCTGGTGGAAGGTTGCTGGGTGGAGGCGAGTGGAGTTGGGAGTTGCGAGGGTGAGTACATGGGAAGTTCAGAAGCGGAGATGGAGATGGAGGTCATGAGGAAGAGATGGTGGATTGGACCCGAGGCTAATTCCTCCGTGAAAGAGAGACTGGTGGTGGCTGTGGGCTATATCAGGGAATGCACGAAGAACTCCAACGTGGTGATTCAGGTGTGGGTTCCCTTACGGAGTGGGCTTGTGGGTGGGCCTGGGAATAACCTCAGAAGAAATCATCCAGATGAGTGGGTTTCAGTTGAGATGAACATGAACATGAACATGAACATGAACAGCGCAAGGGACGTAAGCCTTCGGTTCTACAGAAGCCATGAGTACCCTCGTGTTCCTTATTATGTGGACGTACCTGGTTCTTTAGCCCTCCCTGTGTTGGAAAGAGGCACCCACACATGCCTTGGTGTCATCCTCATTCTAATGCCTCCCTGTGACACCATCAACTATTGCCCCCAAGTTCTTAACAATAGTCTTCTCTGCAATTCTTCTTTCCAGGTGTTCGAGGAGGTGTACGAAGCAGCAGTGAATGAGATGGCGGAGGTGATGAAGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCACATGGGCTCCTTGTTGCATCCAACAGGGAGGGAAGTGTGGCTATGGCCATTCCACCGAGACTCACTTCTCAACGGTGGAGAGAGCGTGTTTTGTGGGGGAAGCCCAAGCACTTCCCTTCAAGGAAGCATGCTCTCAGCATCACCTCTTGCGTGGACAGGGAATCGTAGGCACAGCCTTCACAACCTCCAAGCCCTGCTTCGCCGTCGACATAGCCGCCTTCAGCAGAGCCCAATATCCTCTGGCGCACCACGCCAACATCTTTGGCCTCCATGCAGCCGTCGCCATTCCTCTAAGGACCCTCTACGCCGACTTCGTCGTCGAGTTCTTCCTTCCCAAGGACTGCCATGACAGGGAACACCAAAACCATTTCCTCAACTCCATATCCCTGCTCCTTCAGCAGTCTTGTCGGAACTTGCATGTTGTCATGGGGGATGAGTTCACGTTGCCGCCGCCGCCGCCGCCACCGCCGCCACCGCCGCAGCAATATCTTAGTAATAAAGAGGAAATGGTTGTGAGTGAGAAATTGGAATCCCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATTGCGCACATGATGGAGGCCCAGGCTCAGGAACAGAAGGGGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCGGCGGTGGTGCTTACGAGGCAGCAGATTTACACGAGCAGCAGGTGTTTGGCGATGAATCTCAGACTCAAACTCAGAGTTTTGGTGGGCGGCGTGGCAGAAAGTCCGGGGAGAAGAGGCGTACGAAGGCGGAGAAGACGATCAGTCTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCACGGGATCACGAGGTGGCCTTCGAGGAAGATAAAGAAGGTAGGGCACTCTTTGAAGAAGCTTCAGCTTGTGATCGATTCAGTGCAGGGTGCCGAGGGTGCCATTAAGATCGGTTCCTTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCACTCATCCATTCCCAACAACTCCTCCTCCTTCTACGGCCATTCTCCACCCTCCTCCTCCTCTCCTTCCACCGCCCCTCCTCAACACCAACACTTCTCCCAAACAAGTTGCACGGCTGCACCTCTGAGGGTGAAGGCTAGTTTTGGGGATGAAAAGATCCGTTTCAGCCTGCAACCCAAGTGGGGGTTCAGAGAATTGGAGGTTGAGATTGGAAGGCGTTTCAATGTGAAGGATTTGGGGAAGGTGGTGGTGAAGTATTTGGATGATGAAGGAGAGTGGGTTGTTTTAGCCTGCGATGGTGATCTGGAGGAATGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTTCTTCTCCTTAA 2178 0.5321 MEYGGGFGSLWECGSAWEEDSIEEVLVEGCWVEASGVGSCEGEYMGSSEAEMEMEVMRKRWWIGPEANSSVKERLVVAVGYIRECTKNSNVVIQVWVPLRSGLVGGPGNNLRRNHPDEWVSVEMNMNMNMNMNSARDVSLRFYRSHEYPRVPYYVDVPGSLALPVLERGTHTCLGVILILMPPCDTINYCPQVLNNSLLCNSSFQVFEEVYEAAVNEMAEVMKCVCRAQNVALALTWAPCCIQQGGKCGYGHSTETHFSTVERACFVGEAQALPFKEACSQHHLLRGQGIVGTAFTTSKPCFAVDIAAFSRAQYPLAHHANIFGLHAAVAIPLRTLYADFVVEFFLPKDCHDREHQNHFLNSISLLLQQSCRNLHVVMGDEFTLPPPPPPPPPPPQQYLSNKEEMVVSEKLESQWQAEACGSWIAHMMEAQAQEQKGKGVCVSLEYLEEAKEEFKVTGKCRWESGGGGAYEAADLHEQQVFGDESQTQTQSFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIKIGSFYNSFPELSSATSHSSIPNNSSSFYGHSPPSSSSPSTAPPQHQHFSQTSCTAAPLRVKASFGDEKIRFSLQPKWGFRELEVEIGRRFNVKDLGKVVVKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSSSP* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g3009 725 Pfam RWP-RK domain 512 559 IPR003035 -
Pvu8g3009 725 CDD PB1_NLP 639 720 IPR034891 -
Pvu8g3009 725 MobiDBLite consensus disorder prediction 603 629 - -
Pvu8g3009 725 Gene3D - 635 720 - -
Pvu8g3009 725 SUPERFAMILY Formin homology 2 domain (FH2 domain) 385 395 - -
Pvu8g3009 725 MobiDBLite consensus disorder prediction 481 495 - -
Pvu8g3009 725 PANTHER PROTEIN NLP2 47 722 - -
Pvu8g3009 725 ProSiteProfiles PB1 domain profile. 638 721 IPR000270 GO:0005515
Pvu8g3009 725 PANTHER PROTEIN NLP8 47 722 IPR045012 GO:0003700
Pvu8g3009 725 SMART PB1_new 638 721 IPR000270 GO:0005515
Pvu8g3009 725 MobiDBLite consensus disorder prediction 481 508 - -
Pvu8g3009 725 Pfam PB1 domain 639 720 IPR000270 GO:0005515
Pvu8g3009 725 SUPERFAMILY CAD & PB1 domains 633 723 - -
Pvu8g3009 725 ProSiteProfiles RWP-RK domain profile. 498 579 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g3009 Pvu-Chr8 59428378 59431166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g3009 53 715 NLP Transcription Factor Family AT1G76350 36.327 5.24e-140 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu8g3009 PB1 1.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g3009 - - var:108322742 1155.2