Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g3008 ATGAGGGAGGATTCTGAGTGCGGTGAAGAAGCGGAGAAGAAGCGGAGAAGGTCAACGGTGTCAATGGAAGAGGAGCGTTGGAAGGGGAAGAGACCCTCGGAGCCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCACTCTTCGGCCACATGCGCTGCCACCCTGAGCGGCACTGGAGAGGGATCAACCCTCCCCCCAACGCAAGAACACATCAGCGGCAGCAGCAGCGGCAGCAGCAAGAGATGAAGATGATAATGACCCAGGAAGACCACGAGGTGGCTGCATGTTTGCTTCTGTTTGCCAATTCCAACAAAGAGAGAGAGAAAGGAAAGGAGAAAGAGAAAGAGGAAGACGTTGATGAGTGGCAGAAGAAGGTGAAGGGGTGTTTTGCGAAGATGAGTGGTGATGGGCACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCACTGGGAGAATCAGAAAGGGGAGAATCTTCTCCTTCTTCACTCACCTGACTCCTCCATCGACTTGAACTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 597 0.5394 MREDSECGEEAEKKRRRSTVSMEEERWKGKRPSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNARTHQRQQQRQQQEMKMIMTQEDHEVAACLLLFANSNKEREKGKEKEKEEDVDEWQKKVKGCFAKMSGDGHKCSICMRVFSTGQALGGHKRCHWENQKGENLLLLHSPDSSIDLNSPPLTLDLRLGL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g3008 198 SUPERFAMILY beta-beta-alpha zinc fingers 35 164 IPR036236 -
Pvu8g3008 198 MobiDBLite consensus disorder prediction 1 37 - -
Pvu8g3008 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Pvu8g3008 198 SMART c2h2final6 36 58 IPR013087 -
Pvu8g3008 198 SMART c2h2final6 142 164 IPR013087 -
Pvu8g3008 198 Pfam C2H2-type zinc finger 37 60 - -
Pvu8g3008 198 Pfam C2H2-type zinc finger 142 166 - -
Pvu8g3008 198 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 9 191 - -
Pvu8g3008 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
Pvu8g3008 198 Coils Coil 109 129 - -
Pvu8g3008 198 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Pvu8g3008 198 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g3008 Pvu-Chr8 59422403 59422999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g3008 32 198 C2H2 Transcription Factor Family AT4G35280 42.922 2.94e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g3008 zf-C2H2_6 5.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g3008 - - pvu:PHAVU_008G291700g 390.193