Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g3002 ATGGGTTGCTGCCAATCGTCGATGCTGCTGAGAGTGGGAGAGAGAGAGACGCACCCTGAAAAGGAAAAGGAAAGGGAAAAGGAAAAGGAGAAGGAAAAGGAGAAGGAGAAAGACCAGGGCTACGGAACCCATCACAGGGCTTCTGCTGGAGGAGACTCTGCCGGTGACCCAGACAAAGAGGGGGTCGATTTCACCTTCGCCGAGTTCTCGCTGCCGGAGCTCAAGGCGGCCACCAACAATTTCAGTTCAGAGTATATCGTCTCCGGGAGTGGCGAGAAGGCGCCCAACCTCGTCTACAAGGGTCGCCTCCACAACCAGAGCCGTTGGATTGCCGTCAAGAAGTTCAGCAAGGCTGCGTGGCCGGATCCCAAGCAGTTCGTCGAAGAGGCTTCCGGCGTTGGCAAGTTGCGCCACCCTAGGCTCGCCAATTTAATCGGTTACTGCTGCGACGGCGACGAGAGGCTCCTCGTTGCCGAGTACATGCCCAATGACACTCTCGCCAAGCATCTTTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGGGTGGCTCTGTACATCGCACAGGCTTTGCATTATTGCAGTACAGAGGGGCGCCCCCTGTACCACGACTTGAATGCTTACCGTGTTCTGTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTCATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTATACGCCTCCTGAATATTTAAGAAACGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACTGTCCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGGAAGAACAATATGCTCTTAATGGATTCGCATTTGGAGGGAAAGTTTTCAACAGAAGAAGCGACAGTAGTTGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGATACGAACGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAACCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCCTGTTCAAGGATGGACCTAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCCTGTTCAAGAATGGACCTAACTGCAATACATCAGATCTTGTTTGCGACACACTACAAAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAAATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGATAGCCATTGATAACTATTCCCAGTTTATTGACGTGGGAACGATGGTCTCCCCAACTGTTTTTGCAAGACGCAGTCTATGCTATCTGCTATGTGATCAGCCAGATCCGGCGCTACGCGACGCCATGCAAGCACAGTGTGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCAGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGACAAAAAGCGAAATTATTATAA 1617 0.504 MGCCQSSMLLRVGERETHPEKEKEREKEKEKEKEKEKDQGYGTHHRASAGGDSAGDPDKEGVDFTFAEFSLPELKAATNNFSSEYIVSGSGEKAPNLVYKGRLHNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSTEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTNDLVTTLAPLHTKPDVRSHIMLGIPKHEEPPSTPQRPLSAMGEACSRMDLTPQRPLSAMGEACSRMDLTAIHQILFATHYKDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKIAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQKAKLL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g3002 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 380 - -
Pvu8g3002 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 380 536 - -
Pvu8g3002 538 Gene3D Phosphorylase Kinase; domain 1 58 160 - -
Pvu8g3002 538 SUPERFAMILY TPR-like 431 534 IPR011990 GO:0005515
Pvu8g3002 538 ProSiteProfiles Protein kinase domain profile. 84 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g3002 538 Gene3D Transferase(Phosphotransferase) domain 1 162 353 - -
Pvu8g3002 538 Gene3D Tetratricopeptide repeat domain 428 537 IPR011990 GO:0005515
Pvu8g3002 538 SUPERFAMILY Protein kinase-like (PK-like) 66 340 IPR011009 -
Pvu8g3002 538 Pfam Protein kinase domain 97 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g3002 538 Coils Coil 518 538 - -
Pvu8g3002 538 MobiDBLite consensus disorder prediction 13 43 - -
Pvu8g3002 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 380 536 IPR045845 GO:0004672|GO:0009742
Pvu8g3002 538 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 380 IPR045845 GO:0004672|GO:0009742
Pvu8g3002 538 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g3002 Pvu-Chr8 59380947 59387873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g3002 56 360 Glycoside Hydrolase AT3G07070 35.366 3.93e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Pvu8g3002 Pkinase 3.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g3002 K14500 - gmx:100808907 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g3002 8 59380947 59387873 Pvu8g3002 8 59380947 59387873 ECH