Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2999 ATGGAAAATAGAGGTGACGGTGCTGATGCTGATCTTCAATTTCACGCTCATTTTGTTCCGGATCCTTCCCAGAGATGTAGTGGAAATGAAGAGGGTGACAAGGTGTCCAAGATAACTCAGCCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCTTGGTCCTTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTCACTTCCTCTGAGGAGCATTAAGACAAATACTTCTTCCCAGGATATTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTCGTCAGATTCTCCTTCGGATAAACCTTCCAATTCAATTCATCTGTCTCTTATAAGTAAGGTCTTCTCCCCATCAACAAAAGGTGCACACTCGTTACCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAAGGCAGATGGAGGACATTTTGTGTCTGATTCTGGTTCAAGTAAAACGGGCGTTCATCCGCATTTGACTCGATCGTTTTCAGTCCCAGCTAATGGCAAAACCACTGGTTTAAGGGTTACTGATTCCAAGGGCTTAATTCGTGTAATTTCAGCAAAGCCACATCTTCAAACTGTTCGTATAAACTCAACTGATGGTGGTTTTGTTCCAGAGATCGCCATTGAAGATGCCACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCAGGAAGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTTCAATCGTCAAACTACTGTTAGACAGACATCAAATGTGCCACCGCAGACAGAAGTAGTTTATTACAGGATCTGGCAGGATATACCAGTACTGATCTTGGTCAGCATGCTTGCTTACTTTTGTTTCCTAGAGCAACTACTGGTTTCAGAGTTGGGCCCCCGTGCTCTTGCCATTTCATTACCTTTCGCCTGTGTTTTAGGTTTCCTTTCATCTATGATTGCATCAACTATGGTGAGCAGAAGTTTCGTTTGGGCCTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACAATTCTCAATTTAAATGCAATTCTCTCGATTCTCCTTTCCTCGTTCATTGGGTTTGGGATTGCAATCGGTATGAATCATCTGGTTATGGAATTTATTGAATGGAGAAAGAGTAGGAGGATTCAATCCTCCATGGAGAATGTGAACATGACAAGGCAGCAGCAGCATTGA 1422 0.4276 MENRGDGADADLQFHAHFVPDPSQRCSGNEEGDKVSKITQPRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRTSLPLRSIKTNTSSQDIERTGLIVPKTPSSDSPSDKPSNSIHLSLISKVFSPSTKGAHSLPVTPFATSASEKADGGHFVSDSGSSKTGVHPHLTRSFSVPANGKTTGLRVTDSKGLIRVISAKPHLQTVRINSTDGGFVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLKIFNRQTTVRQTSNVPPQTEVVYYRIWQDIPVLILVSMLAYFCFLEQLLVSELGPRALAISLPFACVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAILSILLSSFIGFGIAIGMNHLVMEFIEWRKSRRIQSSMENVNMTRQQQH* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2999 473 SUPERFAMILY RING/U-box 250 305 - -
Pvu8g2999 473 MobiDBLite consensus disorder prediction 90 134 - -
Pvu8g2999 473 CDD RING_CH-C4HC3_MARCH 254 302 - -
Pvu8g2999 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 309 IPR013083 -
Pvu8g2999 473 MobiDBLite consensus disorder prediction 164 185 - -
Pvu8g2999 473 PANTHER OS02G0165000 PROTEIN 30 471 - -
Pvu8g2999 473 PANTHER OS02G0165000 PROTEIN 30 471 - -
Pvu8g2999 473 MobiDBLite consensus disorder prediction 65 134 - -
Pvu8g2999 473 MobiDBLite consensus disorder prediction 65 82 - -
Pvu8g2999 473 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Pvu8g2999 473 SMART ringv_2 253 302 IPR011016 GO:0008270
Pvu8g2999 473 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Pvu8g2999 473 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2999 Pvu-Chr8 59364989 59370251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2999 237 308 C3H Transcription Factor Family AT2G37950 46.667 1.80e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2999 - - gmx:100789461 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0025 6 656749 664103 Pvu8g2999 8 59364989 59370251 PCT