Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2990 ATGGAGGAGATGCAGCAACTCCTCAGCATGGGCTTCCCCGACGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGCGGCAAATCCACCTTCAAAGCCACCGAATGGATTCTCACTCACAAAACCACCGCCGCCAACCCCTCCGCGTCCACCTCCACCTTCCAGCCCAAGCTAGATCGCTTCTTCCATTCTTCCCAATCCCCCACACCACCACAATCGCAGTCGCAGGAAGAAGAAGAAGGAGAAGACGAAGAACCTTCCAAACGTCGCAGGCCTTCTACACATTCTGCACAGCAGCAACCACAACAACAAAACTGGCCCACTTTCTCCTTCAAGAGCGCAGAGAAGAAACACGCGAACGCTCACATTCACCACCAACCGTTGTACGAGCGCTTGCGTCCCAGAACCCTCGACGACGTCGTAGGACAGGACCATCTCCTCGCCGCCAATTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCTTCGATCCTCCTGTGGGGTCCACCTGGTACCGGTAAAACCACCATCGCGAAATCCATCGTTCAGTCCTCGACCTCCGCCGCAGTTCGTTACCGGTTTGTCTCCTTGTCCGCCGTCACCAGTGGCGTTAAAGACGTCAGGGACGCCGTTGTCGAGGCCAGAAAACTCAGACTTAAATCCAACCAAACCACCGTTCTGTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAACAGGACTCGTTCTTACCCGTCATTGAAGATGGCAGCATTGTGTTCTTTGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATCACGCCTCTCTTGTCTCGCTGCCGTGTCCTCACGCTCAACACTCTCCAACCCCAACACCTTGCCTTGCTTCTCAACCGCGCCGTCAGCGACACGGACAAAGGGTTGATGCAAAGCGCGGGGGTTGAAGTTGATGTTCAAGAGGGTGTTGTTGATTTCATAAGCAACAACTGTGATGGGGATGCTAGGGTTGCCCTCATTGCTCTGGAGATTGCAGCTGTTACTGCAGCAGCGAGGGTACAACATGGTAAAGAAGGGGTGGACGATCTTCACACAATCGAGGAAAACAAGGTTGCTGCTTCTATTGCTGCTGCTGTTAGTATTGATGATGCAAGGGAGGCACTTCAGTGCAAGCATCTTGCTTACGACAAAGCTGGGGAAGAACACTATAATCTGATCAGCGCGTTGCACAAGTCTATGAGGGGAAGTGATGCGAATGCAGCTATTTACTGGTTGGCTAGAATGTTGGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCGTGCGATTTGCAAGTGAGGATGTTGGTTTAGCTGACCCGTTAGCTCTTAATCAGGCTATTTCTTGCTACCATGGTTGCCACTTCGTGGGAATGCCCGAATGCAATGTGATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCAGTTTATCGAGGTTTAGCAGCTGCACAGAAGGCAGTGAGGGAATCTGCTGGACAGAATGAGGGGGTGCCTCTCCATTTGAGGAATGCTCCAACCAAACTAATGAAGGACATTGGGTATGCTAAGGGATACATCTACACTCCGGACAACCCTTCAGCCACACAAACCTACTTGCCACCATCACTTCAAGGCTACAAGTTCCTCGATTGGCCCCACAGTGTTCCTTAG 1689 0.5258 MEEMQQLLSMGFPDELAAQALAATGGKSTFKATEWILTHKTTAANPSASTSTFQPKLDRFFHSSQSPTPPQSQSQEEEEGEDEEPSKRRRPSTHSAQQQPQQQNWPTFSFKSAEKKHANAHIHHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKSIVQSSTSAAVRYRFVSLSAVTSGVKDVRDAVVEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFFGATTENPSFHLITPLLSRCRVLTLNTLQPQHLALLLNRAVSDTDKGLMQSAGVEVDVQEGVVDFISNNCDGDARVALIALEIAAVTAAARVQHGKEGVDDLHTIEENKVAASIAAAVSIDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLVRFASEDVGLADPLALNQAISCYHGCHFVGMPECNVILAQCVAYLALAPKSVAVYRGLAAAQKAVRESAGQNEGVPLHLRNAPTKLMKDIGYAKGYIYTPDNPSATQTYLPPSLQGYKFLDWPHSVP* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2990 562 CDD AAA 140 275 - -
Pvu8g2990 562 Pfam MgsA AAA+ ATPase C terminal 408 554 IPR021886 -
Pvu8g2990 562 Gene3D - 486 560 - -
Pvu8g2990 562 SUPERFAMILY post-AAA+ oligomerization domain-like 392 556 IPR008921 GO:0003677|GO:0006260
Pvu8g2990 562 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 39 IPR015940 -
Pvu8g2990 562 MobiDBLite consensus disorder prediction 40 105 - -
Pvu8g2990 562 Gene3D - 382 485 - -
Pvu8g2990 562 MobiDBLite consensus disorder prediction 40 74 - -
Pvu8g2990 562 CDD HLD_clamp_RarA 282 361 - -
Pvu8g2990 562 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 17 560 - -
Pvu8g2990 562 Gene3D - 114 281 IPR027417 -
Pvu8g2990 562 SUPERFAMILY UBA-like 4 40 IPR009060 GO:0005515
Pvu8g2990 562 Gene3D - 282 360 - -
Pvu8g2990 562 Pfam AAA C-terminal domain 309 407 IPR032423 -
Pvu8g2990 562 Pfam ATPase family associated with various cellular activities (AAA) 164 276 IPR003959 GO:0005524|GO:0016887
Pvu8g2990 562 Gene3D - 1 51 - -
Pvu8g2990 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 348 IPR027417 -
Pvu8g2990 562 SMART AAA_5 160 282 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2990 Pvu-Chr8 59331222 59332910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2990 123 287 Core DNA Replication Machinery Family AT1G63160 26.786 9.31e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2990 K07478 - gmx:100799257 845.114