Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2983 ATGGCACAGCTTCCATGTGACTCCGATGGCCTCTGCATGCGCTGCAAGGAGAAGCCTCCTTCTTCCCAAACCCTCTCTTGCCGCACATGCGCCACTCCATGGCACATTTCTTGCCTCACTGCTCCGCCGGTCTCCGTCTCCGACCTCCACTGGGACTGCCCTGACTGCTCCGACCTCTGCAGTCACCCTCCGGTCGCTTCCTCCGACGACATTGTCTCCTCCATCCGCGCTATTCAGGCGGATGAATCCCTCTCTGACCAGCAAAAGGCCAAACGATGCCAAGAGCTGCTCGCCGGTTCCTCCGCTTCATCATCGGATCCGTCGAAGGACAAAACTGCTGATATCTTCGATGACAGCTTCAGCTGCTCCATTTGCATGCAACTACCTGATAGGCCTGTCACGACGCCTTGTGGGCATAATTTCTGCTTGAGATGCTTTGAGAAATGGATCGGTCAAGGAAAACGCACATGTGCGAATTGTCGAGCTCAGATACCTGCGAAGATGTCGGGTCAGCCGAGGATTAACTCGCAGTTGGCTATGGCGATTCGAATGGCGAAGTTAGCGAAGTCTGGGAGGGCTTCTGGGCCACCGAAAGTGTGTCACTTTATGCGGAATCAGGATCGCCCAGATACTGCTTTCACCACAGAGAGAGCGAAGAAAACTGGAAAAGCCAACGCTTGTTCTGGGAAAATCTTTGTTACTGTGCCACCCGACCATTTTGGTCCGATTCCGGCTGAGAATGATCCCAAGAGGAATCGGGGTGTTTTGGTTGGTGACACGTGGGAGGATCGGATGGAGTGTCGTCAATGGGGTGCTCATCTGCCTCATGTTGCGGGTATTGCTGGACAGAGTAGTTATGGTTCCCAATCTGTTGCCCTTTCTGGTGGCTACGTGGACGATGAGGATCATGGGGAATGGTTCCTTTACACTGGCAGTGGTGGAAGAGATTTGAGTGGTAACAAGCGCACCAACAAACTTCAATCCTTTGACCAGAAGTTTGAAAACATGAATGAGGCCTTGCGACTCAGCTGCCGAATGGGTTACCCTGTTCGGGTTGTAAGGTCTCATAAGGAAAAACGTTCTTCTTATGCACCCGAATCTGGGGTGCGTTATGATGGGGTCTATAGAATAGAGAAATGCTGGCGCAAAAATGGAATACAAGGCTGCAAGGTTTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCGTGGACAAGTGATGAATCTGGAGACCGTCCACGCCCACTGCCTAAGATTGAGGAGCTAAAAGGTGCAATTGATGTAACTGAAAGGAAGGGCGATCCATCGTGGGATTATGATGAAGACAAGGGGTGCTGGTTGTGGAAGAAGCCTCCCCCAGAAAGCAGGAAAGCAGTGGACGTCAATGAAGATGGGACAACAGTCAGAGTAAAACGGAAAGCGGAAAACCTGACTGAGGAACAAAAGCAAAAAAAGCTATTGAAAGACTTTGGTTGCTTAATATGCCACAAGGTGTTGGATTTCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGTCTTTTCTGGCCAAAGCCTCATCAGGGAAAGGTCGAGAGGTGGACGCACTTTACGAGCACAAAAGACTATTATGAAATGCCCAGCATGTAGTAATGACATTGCTGATTTTCTTCAGAATCCACAGGTTAATAGAGAAATGCTGAATTTCATAACAAAATTTGGAAAGAAGCCTGAAGAAGAAAAATCTGAAGAGTCAAATGAGGAGGATAATGATGAAAGTCTGCATAATGCAACTGAGCTTTCAAAACCTTCTGATTCTGGTGTTGTCCTAGAGGAAATTAAGGACAGTGATCTGAATCAGCAACATAAGCGAAGGAAATAG 1884 0.4883 MAQLPCDSDGLCMRCKEKPPSSQTLSCRTCATPWHISCLTAPPVSVSDLHWDCPDCSDLCSHPPVASSDDIVSSIRAIQADESLSDQQKAKRCQELLAGSSASSSDPSKDKTADIFDDSFSCSICMQLPDRPVTTPCGHNFCLRCFEKWIGQGKRTCANCRAQIPAKMSGQPRINSQLAMAIRMAKLAKSGRASGPPKVCHFMRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPAENDPKRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGSQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRLSCRMGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDESGDRPRPLPKIEELKGAIDVTERKGDPSWDYDEDKGCWLWKKPPPESRKAVDVNEDGTTVRVKRKAENLTEEQKQKKLLKDFGCLICHKVLDFPLTTPCAHNFCKACLEGVFSGQSLIRERSRGGRTLRAQKTIMKCPACSNDIADFLQNPQVNREMLNFITKFGKKPEEEKSEESNEEDNDESLHNATELSKPSDSGVVLEEIKDSDLNQQHKRRK* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2983 627 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Pvu8g2983 627 SMART G9a_1 245 402 IPR003105 -
Pvu8g2983 627 Pfam Zinc finger, C3HC4 type (RING finger) 120 165 - -
Pvu8g2983 627 SUPERFAMILY PUA domain-like 224 418 IPR015947 -
Pvu8g2983 627 CDD RING-HC 122 160 - -
Pvu8g2983 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 188 IPR013083 -
Pvu8g2983 627 Pfam SAD/SRA domain 253 401 IPR003105 -
Pvu8g2983 627 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 603 - -
Pvu8g2983 627 SUPERFAMILY RING/U-box 114 168 - -
Pvu8g2983 627 ProSitePatterns Zinc finger RING-type signature. 509 518 IPR017907 -
Pvu8g2983 627 MobiDBLite consensus disorder prediction 575 627 - -
Pvu8g2983 627 Pfam RING-type zinc-finger 494 548 IPR027370 -
Pvu8g2983 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 59 IPR013083 -
Pvu8g2983 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 604 IPR013083 -
Pvu8g2983 627 ProSiteProfiles YDG domain profile. 250 398 IPR003105 -
Pvu8g2983 627 ProSiteProfiles Zinc finger PHD-type profile. 9 59 IPR019787 -
Pvu8g2983 627 ProSiteProfiles Zinc finger RING-type profile. 494 551 IPR001841 -
Pvu8g2983 627 ProSiteProfiles Zinc finger RING-type profile. 122 161 IPR001841 -
Pvu8g2983 627 SUPERFAMILY RING/U-box 488 574 - -
Pvu8g2983 627 Gene3D - 221 417 IPR036987 -
Pvu8g2983 627 SMART ring_2 12 56 IPR001841 -
Pvu8g2983 627 SMART ring_2 122 160 IPR001841 -
Pvu8g2983 627 SMART ring_2 494 550 IPR001841 -
Pvu8g2983 627 SMART PHD_3 11 57 IPR001965 -
Pvu8g2983 627 ProSitePatterns Zinc finger PHD-type signature. 12 56 IPR019786 -
Pvu8g2983 627 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 603 IPR045134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2983 Pvu-Chr8 59289072 59292673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2983 3 580 C2H2 Transcription Factor Family AT5G39550 61.800 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2983 K10638 - gmx:100781044 1040.41