Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2948 ATGTCTGTGAATCGAAAGCCTCCAGCTTCGAATGGTAGATTACCATCGAATATGAAGTGTTGGAAGGTGAATGAGCCTCTGCATGGGTCTAATTCTCCCAGGACATGTAGGCGAAAACCCTTGCTCCTTTGGTTCTTTGGCTTTGTTGCCATAGGGAGTATTTGGTTTATCTTGAGCTTCAATAGTAGCTATTTGGTGAACAAGGAGAATGAAGCAATTTGTGAAAAAAGAGCAAGAATCTTGCTACACCGTTACAATGTTAGTAGGGAACAGATTTATGCTTTGGCCTCCTTGTTCCCTGGATCAGATCAGATTTTGTTCAACTGTATTGATGAAAGAAGACTTCGGATGCTGTTAAGGAGTGGCATGGTCAGCACTCCACAGTTAATGTGTCCAGAGAATGAGGAGTCAAAAAAGGAGCGTATATGTGTAGCAGACACTGTAGAACCTATCGAACAATGTCCAATTCTCAATGATTATGTCCAGGCAAGACTTGAATTATCAGTCTCATTCAAAAATTATGTATCATTGGCCTCGGGCACTGCACTTTCGACTGATTTGGTTAGTTATTTCCTCCGTGGAAAGAACATTGTGCAACCGTTGGAACGGAGGGTATCTGCAATTTGGGGTCATGTGAGTTCATCTGATTTAACTAAAGGATTCTGGTGGGTCCTTAATGGAATTGTAATGTCCTACTTCTGTTTACTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGCTGCACAACAAAAGCGGCTGAAGCATTTTGCACAGGGTCCTTCAAGGGGTGCTGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATATTTGGGTCCTTTTGGTTATTTTGGCACCTAAATATGGACATCATGCAGAGAAGAGAAGAAATGCTAACCAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACATTTCACCATGATAAACATCCTTCTGCAATCGACCAGAAAATTTTTGGAGAATATACCGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCATTCAGATAGGATGCATTTTGAGAAACAGCATGGGTGGACAATTAAGAAAATGGAAACAGAGAATGAGGCATTAGTCCAAGATTGCATTCCCGGAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTCACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACACCAGAGCAACGTATTGAAGCGACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCATTGGTGGACAAGCTTCTCCATCAACTCGCCAGCAAGCAAACCATTGTTGTAAATGTTTACGACACAACTGATGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTACTACGCATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAAATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGGGGGGGTGTTTGTTATTACTTTGCTTGTGGGTCATATTTTTTATGCAGCAATAAATAGAATAATAAAAGTTGAGCATGGCTATAGTGAAATGAGTAAGCTAAAAAGTCGTGCTGAGGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAGCTCGATAAAAGACAGATGGATTATGCCCAAACTGCACATGATAGTGGTAAAGATCTCATATCAGTCATAAACGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGAAAGCTTGAGCTTGAAGCTGTAGCTTTTGACCCACGTGCTATTCTGGATGAAGTTTTATCTCCTTTCTCTGAAAAATCTAAAGTAATAGAGCTGGCTGTTTATGCATCCAATCATGTACCTCAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAGTAATTACAAATCTTGTCAGCAATTCAGTCAAGTTCAATCATGATAAAGGACATGTGTTTGTCTCTGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGCTGAGCGAAGGCTTCAACATCAATCAGGACGTATCAAACAGAACATATGATACATTAAGCGGGTTTCCTGTATGCAACAAATGGAAAAGTTGGGCAAATTTTGAGAAGTTAAGTAGCACAGATGATCCTGAAATTATTCAATTATTAGTAATAGTTGAGGACACAGGTACAGGAATTCCTACAGATGCACAAAGCCGAATATTCACACCTTTTATGCAGGCTGATAGTTCCCCCTCCCGAACATATGGTGGAACTGGAATTGGGTTGAGCATTAGTAAATGCTTAGTTGACCTCATGGGAGGTGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAACGCACGTCTCTAGATGCAATGTGGCAGAATAATAATTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGTAGAAAGATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTAGGAATGTCTGTGGATATAACTAATAGTCTGAATTCTGCATGCTCTTGTCTATCTAATACTTGCAACATGAGTACGTCAAACCAGTTGGCCATGATTTTGATAGACAAGGAAGCTTGGGATAAAGAATGTCTTATCTTATGCAAAATCAGGAAGCTTAGACAGAATGGCATCAAAAGGGATCCAATTTTGCCAAAGATTTATCTCCTGGACGCCCACCCTAGCATCGATGAACATGCTGAGCTGAAGTCAGTTGGTATCATAGATGATATACTAACGAAGCCTCTTTGGCTTAGTTCTTTGGTTCAATCTTACAAAGAATCCCTTGGCACTGAAAAAAATGAAGTAAATAGGAAGAAAGTATCCAAACTTGGAAGTTTATTAATGAACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTTTTCTACAGAAATACGAGGCAAAAGTTACTTCTGTGGAGAGTGGCATGGCTGCTCTGGAGGTGCTTAAACTGCCACATAATTTTGATGCTTGTTTTATGGATCTCCAAATGCCAGAAATGAATGGTTTTGAAGCAACAAGGGAAATCCGCCGACTGGAGAGCGAGGTAAATGAGAAAATTGCGTGTGGGCAAGCATCTGCAGAGATGTATGGTAACATCTCTTATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAGAGTTCAAGTGAAGAATGCAGAAATTGCGGAATGGATGACTACGTGACGAAGCCATTTGAAGAAGAGCAGCTCTATACGGCAATGGCACGGTTCTTCTTGCCAGATTCATAG 3669 0.4116 MSVNRKPPASNGRLPSNMKCWKVNEPLHGSNSPRTCRRKPLLLWFFGFVAIGSIWFILSFNSSYLVNKENEAICEKRARILLHRYNVSREQIYALASLFPGSDQILFNCIDERRLRMLLRSGMVSTPQLMCPENEESKKERICVADTVEPIEQCPILNDYVQARLELSVSFKNYVSLASGTALSTDLVSYFLRGKNIVQPLERRVSAIWGHVSSSDLTKGFWWVLNGIVMSYFCLLWRSQKQKLVQGHPAAQQKRLKHFAQGPSRGAGRWRKKLLVIFVSLGIFGSFWLFWHLNMDIMQRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPGNLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTDASAPITMYGTDVTDTGLLRISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASGGVFVITLLVGHIFYAAINRIIKVEHGYSEMSKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKRQMDYAQTAHDSGKDLISVINEVLDQAKIEAGKLELEAVAFDPRAILDEVLSPFSEKSKVIELAVYASNHVPQVVIGDPKRFRQVITNLVSNSVKFNHDKGHVFVSVHLANEVKNPLHIMDAVLSEGFNINQDVSNRTYDTLSGFPVCNKWKSWANFEKLSSTDDPEIIQLLVIVEDTGTGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGERTSLDAMWQNNNFGSEFQGLRALVVDSRKIRAEVTRYHLQRLGMSVDITNSLNSACSCLSNTCNMSTSNQLAMILIDKEAWDKECLILCKIRKLRQNGIKRDPILPKIYLLDAHPSIDEHAELKSVGIIDDILTKPLWLSSLVQSYKESLGTEKNEVNRKKVSKLGSLLMNKQILVVDDNAVNRRVAKGFLQKYEAKVTSVESGMAALEVLKLPHNFDACFMDLQMPEMNGFEATREIRRLESEVNEKIACGQASAEMYGNISYWHIPVLAMTADATQSSSEECRNCGMDDYVTKPFEEEQLYTAMARFFLPDS* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2948 1222 ProSiteProfiles Response regulatory domain profile. 1081 1218 IPR001789 GO:0000160
Pvu8g2948 1222 SMART HKATPase_4 737 906 IPR003594 -
Pvu8g2948 1222 SUPERFAMILY CheY-like 1079 1216 IPR011006 -
Pvu8g2948 1222 ProSiteProfiles Histidine kinase domain profile. 634 906 IPR005467 -
Pvu8g2948 1222 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 901 IPR003594 -
Pvu8g2948 1222 Gene3D - 1075 1219 - -
Pvu8g2948 1222 Gene3D - 922 1062 - -
Pvu8g2948 1222 CDD REC_hyHK_CKI1_RcsC-like 1082 1214 - -
Pvu8g2948 1222 SMART HisKA_10 627 692 IPR003661 GO:0000155|GO:0007165
Pvu8g2948 1222 CDD HisKA 627 688 IPR003661 GO:0000155|GO:0007165
Pvu8g2948 1222 Gene3D CHASE domain 346 573 IPR042240 -
Pvu8g2948 1222 Pfam His Kinase A (phospho-acceptor) domain 627 692 IPR003661 GO:0000155|GO:0007165
Pvu8g2948 1222 ProSiteProfiles Response regulatory domain profile. 929 1058 IPR001789 GO:0000160
Pvu8g2948 1222 PANTHER HISTIDINE KINASE 2 260 1218 - -
Pvu8g2948 1222 PRINTS Bacterial sensor protein C-terminal signature 831 845 IPR004358 GO:0016310|GO:0016772
Pvu8g2948 1222 PRINTS Bacterial sensor protein C-terminal signature 849 859 IPR004358 GO:0016310|GO:0016772
Pvu8g2948 1222 PRINTS Bacterial sensor protein C-terminal signature 866 884 IPR004358 GO:0016310|GO:0016772
Pvu8g2948 1222 PRINTS Bacterial sensor protein C-terminal signature 890 903 IPR004358 GO:0016310|GO:0016772
Pvu8g2948 1222 PANTHER TWO-COMPONENT HISTIDINE KINASE 260 1218 - -
Pvu8g2948 1222 Pfam Response regulator receiver domain 1082 1214 IPR001789 GO:0000160
Pvu8g2948 1222 Gene3D - 66 101 - -
Pvu8g2948 1222 Gene3D - 293 345 - -
Pvu8g2948 1222 ProSiteProfiles CHASE domain profile. 342 566 IPR006189 -
Pvu8g2948 1222 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 613 693 IPR036097 GO:0000155|GO:0007165
Pvu8g2948 1222 SUPERFAMILY CheY-like 924 1056 IPR011006 -
Pvu8g2948 1222 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 681 901 IPR036890 -
Pvu8g2948 1222 SMART CHASE_2 342 541 IPR006189 -
Pvu8g2948 1222 Pfam CHASE domain 345 539 IPR006189 -
Pvu8g2948 1222 Gene3D - 600 690 - -
Pvu8g2948 1222 Gene3D - 691 907 IPR036890 -
Pvu8g2948 1222 SMART REC_2 1080 1214 IPR001789 GO:0000160
Pvu8g2948 1222 CDD HATPase_EvgS-ArcB-TorS-like 742 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2948 Pvu-Chr8 59078551 59088594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2948 45 1220 Miscellaneous Gene Families AT5G35750 56.797 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu8g2948 CHASE 1.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2948 K14489 - gmx:100805107 2083.53