Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2920 ATGCCATCCAAATCTGAAACTGCTAATCAGCCAAGGTCTAATCCACATTCCTTTGCACCTAACAATGTTTATTCTGAGCCCTGGTGGCGAGGTATTCAGTACAATTCTGTTCCACAAGCAATGTCAGGGGTGAATGCATCAAATTCATCTTCACTTGAACGCCCCAATGGCGATTCAGAATCCAGTGAAGATCAATCTTTGTCCAATAACGGGGTGAATGAGGAAGACGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAAGCAGGAAATTATGGACAAGAGCACCAAGCCATGCTGCATTCTTCAACATCTGCACCTTCTAGGCGTGATGACTGCCTTACACATGCTCCACAACTGGAACTTATTGGCCATTCATTTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAGGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGAGGTAATGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAGGCTTCAAGCCACACGAACAAGGAAAAGGATATGGGTGCAGGGCCAGTCCCCTCTGATTCTGCTAAGACCTGGAACTCTCCCAGTGTGCAACAAGACACGAGAGAATCTCAAGTGCATGAGAGATTTGGAAAACACAACTATGCAAATGTTTTGCAGTCATCGTCTGCATTTTGTTTGCACTCGGGTGAGAGAGTTGAGGAAGGGGTCTGTTCAGGTCAACAACGGGGAAGCATCTCATCTGAGCAAACCTCACAGAGGCGTCTTGCTATTCAGTAA 915 0.4568 MPSKSETANQPRSNPHSFAPNNVYSEPWWRGIQYNSVPQAMSGVNASNSSSLERPNGDSESSEDQSLSNNGVNEEDDDATKESQPTAPNQAGNYGQEHQAMLHSSTSAPSRRDDCLTHAPQLELIGHSFGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASSHTNKEKDMGAGPVPSDSAKTWNSPSVQQDTRESQVHERFGKHNYANVLQSSSAFCLHSGERVEEGVCSGQQRGSISSEQTSQRRLAIQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2920 304 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Pvu8g2920 304 MobiDBLite consensus disorder prediction 210 251 - -
Pvu8g2920 304 MobiDBLite consensus disorder prediction 40 73 - -
Pvu8g2920 304 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Pvu8g2920 304 MobiDBLite consensus disorder prediction 278 304 - -
Pvu8g2920 304 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Pvu8g2920 304 MobiDBLite consensus disorder prediction 40 114 - -
Pvu8g2920 304 MobiDBLite consensus disorder prediction 1 24 - -
Pvu8g2920 304 MobiDBLite consensus disorder prediction 83 112 - -
Pvu8g2920 304 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Pvu8g2920 304 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Pvu8g2920 304 MobiDBLite consensus disorder prediction 1 21 - -
Pvu8g2920 304 MobiDBLite consensus disorder prediction 232 246 - -
Pvu8g2920 304 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 295 - -
Pvu8g2920 304 MobiDBLite consensus disorder prediction 285 304 - -
Pvu8g2920 304 Gene3D - 149 211 - -
Pvu8g2920 304 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Pvu8g2920 304 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 295 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2920 Pvu-Chr8 58876841 58880492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2920 76 304 CCAAT-HAP2 Transcription Factor Family AT3G20910 47.308 1.80e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pvu8g2920 CBFB_NFYA 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2920 K08064 - gmx:102664020 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0652 6 17951993 17956210 Pvu8g2920 8 58876841 58880492 PCT