Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2918 ATGGCACACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAACGTTCTGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTGTTTAGATGGAGACCAGGTAGAGATGCGAGATACAAGAAAACTGAGATATGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCGGTTCAAGTCCGAGACACAGCTCTCCATATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCTTCTTTTGGAAAAGCACGTCCTAATGATACTATCCTGAAGCTTCAAAGAACAACTCCATATTACAAAAGAAACCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCCGAGTGCCCTTATAGACACGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCAGGGGAGATGGCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCTCATGGAGAAATTGAATCTATAAAAATGGTTCTGCAACGGGCTTGTGCTTTTGTATCATATACTACCCGAGAAGGCGCAGAAAAGGCAGCAGAAGAACTCTCGAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCAGATGGCTCTGATCAAGCTAGGCAGCAGTCATCTGTGGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACTCAAGGAACACTTTTCTATAACAATCCACCACCTATGCAGCAGGAAAGAAGCTACTACCCGTCAATGGATCCTCAAAGAATGGGTGCCCTTATTTCATCTCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCGGGGGAGAACAAGTCCAGTTTGGAGAAGCAGCCAATGCAACACTATGCCCGTCCAATGATGCCTCCTCCCCCTGGCCAATATCACCATCAGTATTACTCTCCATATGGTTATATGCCGCCAGTTCCCCCTTATCAACAGTACCCACCACCTCCATACAATACTGCCGCTCCATCCCAGCCGCCGGCTGCAAATCATCCTTATCAGCATTCTACGCAACCAGTGTCTTCACAGACAGGGTCTGTACAGGCTGCACATGCCCCAACTGAATCTGGAACATCAACATCGGGGTCACAGCAGCAATGA 1455 0.4735 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQSSVAHSGLLPRAVISQQQNQDQTQGTLFYNNPPPMQQERSYYPSMDPQRMGALISSQDGPPGGPSGSGENKSSLEKQPMQHYARPMMPPPPGQYHHQYYSPYGYMPPVPPYQQYPPPPYNTAAPSQPPAANHPYQHSTQPVSSQTGSVQAAHAPTESGTSTSGSQQQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2918 484 MobiDBLite consensus disorder prediction 299 321 - -
Pvu8g2918 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Pvu8g2918 484 Gene3D - 149 205 - -
Pvu8g2918 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Pvu8g2918 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Pvu8g2918 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Pvu8g2918 484 MobiDBLite consensus disorder prediction 304 321 - -
Pvu8g2918 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 461 - -
Pvu8g2918 484 SUPERFAMILY RNA-binding domain, RBD 215 304 IPR035979 GO:0003676
Pvu8g2918 484 MobiDBLite consensus disorder prediction 334 360 - -
Pvu8g2918 484 MobiDBLite consensus disorder prediction 420 441 - -
Pvu8g2918 484 MobiDBLite consensus disorder prediction 442 484 - -
Pvu8g2918 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Pvu8g2918 484 Gene3D - 212 310 IPR012677 -
Pvu8g2918 484 CDD RRM_RBM22 227 300 - -
Pvu8g2918 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 461 IPR039171 GO:0003723
Pvu8g2918 484 MobiDBLite consensus disorder prediction 334 484 - -
Pvu8g2918 484 Pfam Torus domain 150 194 IPR032297 -
Pvu8g2918 484 MobiDBLite consensus disorder prediction 377 394 - -
Pvu8g2918 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2918 Pvu-Chr8 58860454 58864093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2918 217 411 C2H2 Transcription Factor Family AT2G19380 25.229 4.28e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2918 K12872 - gmx:100778975 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2918 8 58860454 58864093 Pvu8g2918 8 58860454 58864093 ECH
Pvu6g0102 6 5033868 5038095 Pvu8g2918 8 58860454 58864093 PCT