Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2904 ATGTCTGTAAGCTTAAGGAATCACTCACTTCCTCCCAAAAGCTTCTCCCTCACCTTGCTTCTTTTGTTGAACTCTCTTTTGTTTTCTTCTTGTTACTCCCTGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTACTGCAGATGCATTAGCATCTTGGAATCCTTCCAGCCCAAGCCCATGCAATTGGTTTGGGGTGAGCTGCAACTTACATGGAGAGGTGGTTGAGATAAACTTGAAGTCAGTGAACTTGCAAGGCTCATTACCTTCAAATTTTCAAGCTCTAAGATCCTTGAAGATTCTTGCCCTCTCAACAGCCAACATCACAGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAACTCACTTTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATGCCAACTTTCTTGAAGGCAACATTCCATCCATCATTGGAAATTTATCAAGTCTGGTGAACTTGACACTCTATGACAACAAATTCAGTGGCGAAATTCCAAAGAGTATTGGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACATTAAGGGTGAGGTGCCATGGGAAATTGGTAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGAATTCAGACCATAGCCATTTACACAACTCTGCTTTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAATCTTCTCTTATGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATCTCAGAAAATCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTACAAGGGCTTCAACTGAGTGTTAACAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTGGAAGTTGACAATAATGCTATTTTTGGAGAGATTCCTCCAACTATCGGCAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTCTCAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAACTTAACTGGTCCAGTACCCAAACAACTTTTTGGGCTGAGGAACCTCACTAAACTGCTGCTTCTTTCCAATGATTTGTCAGGCTCTATACCACCAGAGATAGGTAACTGCACAAGCCTCTATAGGTTGAGGTTAAATCACAATAGACTGTCAGGTACAGTTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTTTTGGATGTGAGCAGCAATCATCTTGTCGGGGAAATTCCTCCTACACTATCCAGATGCCAAAATCTTGAGTTTCTTGACCTCCACTCAAATGGTCTAATTGGCTCAGTTCCAAACAATCTGCCCAAAAATCTACAGTTAATTGATCTCTCAGACAACAAGCTAACTGGTGAACTGAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGAGGAAGCATCCCTGCTGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAACAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCACTAGAAATCGTTCTCAATCTGAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTCTGGTCTTAGGAAACTTGAAGTGCTTGACCTCTCCCACAACAAGCTCTCAGGGAAGTTGGATGCTCTATCTGACCTTCAAAACCTTGTTTTGTTAAATGTTTCCTTCAATGATTTCACTGGAGAATTGGCTAATACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTGTTGCAACTCCAAAGGAAGCCAAGGGTCATGCCAGGTTGTTCATGAAGATTACATTGTCCATTCTCTTAAGCATCAGTGCAGCACTAGTACTGCTCACAGTCCTTGTCTTAATTCGTGCTCATGTTTCTAACAAAGTACTCATGAGAAACAACAATTGGGTGTTAACTTTGTATCAGAAGTTTGAATTGTCTGTTGATGATATTGTTCGGAATTTGACTTCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAGTTCCAAATGGACAAACAGTAGCAGTTAAAAAGATGTGGTCATCGGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTAAGTTCAATCAGACACAAGAACATCATCAAGCTTCTGGGAAAAGGAAAAGCAGAATGGGAGACCAGATATGATGTTATGGTAGGAGTGGCTCATGCACTTGCATATTTGCACCATGATTGCGAGCCTTCCATATTGCATGGAGATGTTAAAGCCATGAACGTGTTGTTAGGTCCTGGCTATCAGCCTTACCTTGCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGTTGATTGTGCTAATTCCAAGCCACTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAACACGCATCTATGCAGCAGATCACTGAGAAAAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTTCTGACAGGAAGGCACCCACTTGACCCAACACTTCCTGGGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGCAAAGGAGACCCATGTGACATTCTTGACCCAAAACTGAGAGGGAGAACTGATTCCACTGTGCATGAAATGCTACAAACTCTAGCTGTGTCATTTCTATGTGTCAGCACCCGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCACTGCTCAGGGAAATTCGACTTGTTGAGGCCCCAACAAGAGATCCTGATGCATTGAAGGGAGTTTCAACAGTGCATGCTTCTCCATCACCTCTTAAAATTGTAGTTTCATAA 3144 0.4307 MSVSLRNHSLPPKSFSLTLLLLLNSLLFSSCYSLLNEQGQALLAWKNSLNSTADALASWNPSSPSPCNWFGVSCNLHGEVVEINLKSVNLQGSLPSNFQALRSLKILALSTANITGRIPKEIGDCKELTFIDLSGNSLFGEIPEEICRLSKLQTLALHANFLEGNIPSIIGNLSSLVNLTLYDNKFSGEIPKSIGSLTELQVLRVGGNTNIKGEVPWEIGNCTNLVVLGLAETSISGNLPSSIGMLKRIQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLQNLLLWQNNIVGTIPEELGSCTQLEVIDISENLLTGSIPTSFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAIFGEIPPTIGNLRSLTLFFAWQNKLSGKIPDSLSQCQDLQALDLSYNNLTGPVPKQLFGLRNLTKLLLLSNDLSGSIPPEIGNCTSLYRLRLNHNRLSGTVPSEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNGLIGSVPNNLPKNLQLIDLSDNKLTGELSHSIGSLTELAKLNLGKNQLRGSIPAEILSCSKLQLLDLGNNSFSGEIPKEVAQIPSLEIVLNLSCNQFSGEIPPQFSGLRKLEVLDLSHNKLSGKLDALSDLQNLVLLNVSFNDFTGELANTPFFRKLPLSDLTGNDGLYIVGVATPKEAKGHARLFMKITLSILLSISAALVLLTVLVLIRAHVSNKVLMRNNNWVLTLYQKFELSVDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTVAVKKMWSSAESGAFTSEIQTLSSIRHKNIIKLLGKGKAEWETRYDVMVGVAHALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLADFGLARIASENVDCANSKPLQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLASKGDPCDILDPKLRGRTDSTVHEMLQTLAVSFLCVSTRAEDRPTMKDTVALLREIRLVEAPTRDPDALKGVSTVHASPSPLKIVVS* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2904 1047 Pfam Protein tyrosine and serine/threonine kinase 767 825 IPR001245 GO:0004672|GO:0006468
Pvu8g2904 1047 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Pvu8g2904 1047 SUPERFAMILY Protein kinase-like (PK-like) 757 1013 IPR011009 -
Pvu8g2904 1047 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 826 1028 - -
Pvu8g2904 1047 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 827 - -
Pvu8g2904 1047 SUPERFAMILY RNI-like 82 404 - -
Pvu8g2904 1047 SUPERFAMILY RNI-like 324 668 - -
Pvu8g2904 1047 SMART LRR_typ_2 342 366 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 294 318 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 486 510 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 438 462 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 629 652 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 556 580 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 101 125 IPR003591 -
Pvu8g2904 1047 SMART LRR_typ_2 173 197 IPR003591 -
Pvu8g2904 1047 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 827 - -
Pvu8g2904 1047 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 826 1028 - -
Pvu8g2904 1047 Pfam Protein kinase domain 834 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2904 1047 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Pvu8g2904 1047 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Pvu8g2904 1047 PRINTS Leucine-rich repeat signature 417 430 - -
Pvu8g2904 1047 PRINTS Leucine-rich repeat signature 629 642 - -
Pvu8g2904 1047 SMART LRR_sd22_2 270 296 - -
Pvu8g2904 1047 SMART LRR_sd22_2 532 558 - -
Pvu8g2904 1047 SMART LRR_sd22_2 318 347 - -
Pvu8g2904 1047 SMART LRR_sd22_2 629 654 - -
Pvu8g2904 1047 SMART LRR_sd22_2 486 515 - -
Pvu8g2904 1047 SMART LRR_sd22_2 149 175 - -
Pvu8g2904 1047 Pfam Leucine rich repeat 610 665 IPR001611 GO:0005515
Pvu8g2904 1047 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Pvu8g2904 1047 Gene3D Ribonuclease Inhibitor 207 435 IPR032675 -
Pvu8g2904 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 855 867 IPR008271 GO:0004672|GO:0006468
Pvu8g2904 1047 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Pvu8g2904 1047 Gene3D Transferase(Phosphotransferase) domain 1 828 1021 - -
Pvu8g2904 1047 Gene3D Ribonuclease Inhibitor 437 700 IPR032675 -
Pvu8g2904 1047 ProSiteProfiles Protein kinase domain profile. 765 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2904 1047 SMART serkin_6 765 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2904 1047 Gene3D Phosphorylase Kinase; domain 1 742 827 - -
Pvu8g2904 1047 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2904 Pvu-Chr8 58772295 58776316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2904 31 1042 Receptor kinase-like Gene Family AT5G56040 62.428 0.0 1283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu8g2904 Pkinase 3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2904 - - gmx:100813139 1733.77