Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2878 ATGGCTGACTCGGACAACGACTCGGGGGGAGCGCAGAACGCCGGGAACAGCGGCTTCAGCGAGTTGTCGCCGCGGGAACAGGACCGCTTCCTCCCAATCGCCAACGTCAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATCACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCGATGACAACCCTGGGATTCGAGGACTACGTGGAGCCGCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCTCGCGACAAGGACGCCTCCTCCTCTGCCGTCAGCGGCTACGATTACTCCCCGTCCTCCGCCGCCTCCATGATGCATCACCAGGGACACGTGTACGGCTCCCCCGCGTTCCATCAAGTGAGTGCCGGTCCGGTTATGGGTAAGCCTGGGCCTGGGCCTGGGCCCAGTTATCCTGCCCCTGGTCGACCCAGATAG 564 0.6135 MADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKDASSSAVSGYDYSPSSAASMMHHQGHVYGSPAFHQVSAGPVMGKPGPGPGPSYPAPGRPR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2878 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pvu8g2878 187 SUPERFAMILY Histone-fold 27 132 IPR009072 GO:0046982
Pvu8g2878 187 MobiDBLite consensus disorder prediction 157 187 - -
Pvu8g2878 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu8g2878 187 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu8g2878 187 MobiDBLite consensus disorder prediction 1 26 - -
Pvu8g2878 187 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 150 - -
Pvu8g2878 187 MobiDBLite consensus disorder prediction 171 187 - -
Pvu8g2878 187 MobiDBLite consensus disorder prediction 1 23 - -
Pvu8g2878 187 Gene3D Histone, subunit A 19 148 IPR009072 GO:0046982
Pvu8g2878 187 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pvu8g2878 187 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pvu8g2878 187 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2878 Pvu-Chr8 58598774 58599862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2878 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.290 1.47e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu8g2878 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2878 K08065 - gmx:100500556 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2878 8 58598774 58599862 Pvu8g2878 8 58598774 58599862 ECH
Pvu6g0605 6 17480147 17484332 Pvu8g2878 8 58598774 58599862 PCT