LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g2850	ATGTTGCCTCTTTTCTTGCCCCTTTCCCACATACACCTTTCTAAAGATGTTCTCCTCCAACCCGTTTTTCTTCATGGCTTCTCCTGCTTCCTCCACCTTCTGTTGCTCGTCGCCGTTTCATTGTCATGGGTTTGGAACAAATTCACGACACGTGTCAGGGATGAATCTAAGGAGAATCTCGACAACACCCTCTTTAAAACGACCGTGTTTGTTTCTCTGGGCGTCTCTGCTTTCAGTTTTCTCCTCTGTTTGTTTAATTACTTCTACTGGTACTCTAGTGGCTGGTCAGAGGCAGAGCTCGTGACCCTTTTGGATTTGGTGCTCAAAACAGTTGCGTGGGGCGTTGTTTGTGTTTGCTTGAACAAGGGGTTCTTCAGTTCAGCCGAAAGAAGGTTCTCATTCCTCTTCAGAGCTTGGTGCGTCTTATACCTCTCTGTTTCTTGCTATTGCTTCGTGGTGGACATTGTTGTTATATCAGAGAGACGCGTTGCTTTGCCAACTCAGTACTTGGTTTCTGATGTGGTTTCCACTTGCGTTGGTATGTTATTCTGTTACGTGGGATATTTCGTGAAAAAACAAGGCCACGTTCGAGAAAAAGAAAACAACGGTATTCAGGAACCTCTTTTGAATGGTGGCGCAAATGATGGTGATGCCTTGAGTTCAAAAGGGACCAAGGGTGGGGACACTGTTACTCCTTTCTCATATGCTGGCATTCTGAGCCTTTTTACCTTCTCTTGGGTAGGTCCTCTTATAGCTGTTGGCTATAAGAAGACCCTGGACCTTGAGGATGTTCCTCAACTAGACAGCAGAGACAGTGTTGTTGGAGTTTTTCCTGGGTTCAGAGATAAACTTGAGGCTGATTGTGGCACGATGAATAGTGTCACCACACTTAAGTTGGTGAAGTCGTTAGTGATGTTAGCGTGGAAGGAGATTCTTTTCACAGCTTTTCTTGCAGTGTTAAGCACTTTGGCTTCTTATGTTGGTCCTTATCTTATCGACAGTTTTGTTCAGTACCTTGATGGAAAACGGGTATATGAAAACCAGGGCTATGTTTTGGTCTGTGCTTTTTTCTTTGCAAAGATTGTAGAGTGTCTGACCCAAAGGCATTGGTTCTTTAGGGTGCAGCTAGTTGGACTTCGAATTCGTGCACTACTTGTCACGATGATCTATAACAAGGCTCTGACCCTTTCTTGTCAGTCAAAGCAGGAGTTGGTGTATAAAAATCTTGGGCTGGCTTCAATTGCTGCTTTTGTTGCAACTATCCTTGTTATACTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAATTTCAGAAGAAGTTGATGGAGTCGAAAGATGCAAGAATGAAGGCCACGTCCGAGATTTTAAGGAATATGAAGATTCTCAAACTACAAGGATGGGAAATGAAGTTTCTAGCAAAAATAACTGAGCTCAGGAAAACTGAGCAAGGCTGGTTAAAAAAGTTTGTCATGACCACGTTTGTGTTTTGGGGTACCCCCACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGATAATAGGGATCCCCCTTGAATCAGGGAAGATATTGTCTGCACTTGCCACATTCCGAATTCTCCAAGAACCCATTTATAGCCTTCCAGACTCAATTTCGATGATAGCACAAACTAAAGTGTCTCTTGATAGGATTGCATCATTCCTTCGTCTGGATGACTTACCCTCTGATGTTGTAGAGAAGCTTCCCCGTGGTACTTCTGATTCAGAAATTGAAGTGGTTGATGGAAACTTTTCTTGGGAATTATCTTCCCCTAACCCAACATTGCAAAATATAAATCTTAGAGTTTTTCACGGGATACAAAGTGGACTGAAAACGGGCATTGTTGGGAGAACAGGCAGTGGTAAATCCACTCTCATACAAACGCTTTTTCGAATTGTTGAGCCTGCTGCCGGGCAAATTATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTAAGAAATAATTTGGACCCCCTTGAAGAATACACAGATGATCAAGTTTGGGAGGCCTTGGATAAATGTCAACTTGGAGACGAAGTTAGAAAGAAGGAAGGAAAGCTCGACTCCAAAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGTTGGTCTGCCTTGGCAGTGTTGTGCTTAAGAAAAGCAAGGTTTTGGTTCTTGATGAAGCCACTTCATCAGTTGATACAGCTACGGATAATTTGATTCCGCAAACTCTTAGGCAACATTTCACTGACTCCACAGTTATTACCATTGCACATCGAATAACTTCAGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGACAATGGTGCAGGACTTATTGAGGAGTATGACACCCCAACAAGGTTGCTAGAGAACAAGTCATCATCTTTTGCTCAACTTGTTGCTGAGTATACCGTGAGGTCCATGTCCAGTTTGGACAAATCCGATGATCACTGA	2529	0.4282	MLPLFLPLSHIHLSKDVLLQPVFLHGFSCFLHLLLLVAVSLSWVWNKFTTRVRDESKENLDNTLFKTTVFVSLGVSAFSFLLCLFNYFYWYSSGWSEAELVTLLDLVLKTVAWGVVCVCLNKGFFSSAERRFSFLFRAWCVLYLSVSCYCFVVDIVVISERRVALPTQYLVSDVVSTCVGMLFCYVGYFVKKQGHVREKENNGIQEPLLNGGANDGDALSSKGTKGGDTVTPFSYAGILSLFTFSWVGPLIAVGYKKTLDLEDVPQLDSRDSVVGVFPGFRDKLEADCGTMNSVTTLKLVKSLVMLAWKEILFTAFLAVLSTLASYVGPYLIDSFVQYLDGKRVYENQGYVLVCAFFFAKIVECLTQRHWFFRVQLVGLRIRALLVTMIYNKALTLSCQSKQELVYKNLGLASIAAFVATILVILANVPLGSLQEKFQKKLMESKDARMKATSEILRNMKILKLQGWEMKFLAKITELRKTEQGWLKKFVMTTFVFWGTPTFVSVVTFGTCMIIGIPLESGKILSALATFRILQEPIYSLPDSISMIAQTKVSLDRIASFLRLDDLPSDVVEKLPRGTSDSEIEVVDGNFSWELSSPNPTLQNINLRVFHGIQSGLKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDDQVWEALDKCQLGDEVRKKEGKLDSKVSENGENWSMGQRQLVCLGSVVLKKSKVLVLDEATSSVDTATDNLIPQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQDNGAGLIEEYDTPTRLLENKSSSFAQLVAEYTVRSMSSLDKSDDH*	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g2850	842	Gene3D	-	569	828	IPR027417	-
	Pvu8g2850	842	SUPERFAMILY	ABC transporter transmembrane region	303	569	IPR036640	GO:0005524\|GO:0016021
	Pvu8g2850	842	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	410	549	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Pvu8g2850	842	CDD	ABCC_MRP_domain2	582	810	-	-
	Pvu8g2850	842	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	583	826	IPR003439	GO:0005524
	Pvu8g2850	842	CDD	ABC_6TM_ABCC_D1	313	557	IPR044746	GO:0140359
	Pvu8g2850	842	Gene3D	ABC transporter type 1, transmembrane domain	404	565	IPR036640	GO:0005524\|GO:0016021
	Pvu8g2850	842	Gene3D	ABC transporter type 1, transmembrane domain	298	403	IPR036640	GO:0005524\|GO:0016021
	Pvu8g2850	842	SMART	AAA_5	614	805	IPR003593	-
	Pvu8g2850	842	PANTHER	MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN	614	838	-	-
	Pvu8g2850	842	PANTHER	MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN	82	403	-	-
	Pvu8g2850	842	PANTHER	MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN	405	613	-	-
	Pvu8g2850	842	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	614	838	-	-
	Pvu8g2850	842	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	405	613	-	-
	Pvu8g2850	842	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	82	403	-	-
	Pvu8g2850	842	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	579	822	IPR027417	-
	Pvu8g2850	842	Pfam	ABC transporter transmembrane region	414	518	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Pvu8g2850	842	Pfam	ABC transporter	611	753	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g2850	Pvu-Chr8	58486204	58489949	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g2850	583	825	Calmodulin-binding Proteins	AT2G36910	28.455	4.93e-25	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g2850	-		K05666	pvu:PHAVU_008G276200g	1593.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g2850	8	58486204	58489949	Pvu6g0563	6	16931519	16937464	PCT