LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g2841	ATGGACGCCGCCGCCGAGCCCGGCCCCAGTTCGGAGCTCCGGCTCAATGGGGCATCCGAGGATCCAAATCGAAGTGGGTCGGGTCAGAATTTGACGGCGAGATACAAGCTGATTGCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCCCCGGGACTGAGTCCGACGTCCTTTCTGGAATCACCGGTTCTTCTTTCCAATATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAAGCTTCAGCAAACAGTACATGGTTCTAAGGCTTTTGCTGCCTCTGCCACATTTGCAGTAACCACTTCATGCTTCAGTAACAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTTAAACCACTCAACAGGTTGAATATGGTTCCTGCAGACTTCAATAACCGTGCTATCAAACAATCAACTCAAGTAGAAGGTCTAGGAAAAGCTCAATCATTTGTTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTGCTAACGAATTAAGTCTATCATCACCTGTACAAATGGTTAGTTCTTGTCCTAGTGCTTCTGTTGATGTTGATTTGGATGACGTTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGTGGATGTTAGAGGCAGTGGACTTTCAGTTGCAACTGAGAAAACATCTGATGACGGATACAATTGGCGAAAATATGGCCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGTTCTCATGATGGTCAAATTACTGAGATAATTTACAAGGGAACACATGATCATCCTAAGCCTCAACCAAGCTGCCGATACTCTACTGGTACTATTATGTCTATTCAAGTAGAGAGATCTGATAAGGGTTCTTCTTTGGCTGGCCTAGATGACAAAGCACCCTCCATGTATGGTCAGTTGTCCCATGCTGCTGAGCCCAACAGTGCTTCTGAGCCATCACATGTAGCAACAAATGGTGATGGTTTAGAGGGTGTAGGGTTTGTGTCAAACAGGATTGGTGATGACGCTGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCACTCCTGTAGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCGGGTTGCCCTGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCTAGGAATAGCAGCCATGACATGGCAGTTGCAGCAGCTGGACAGACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCAGCTGCTGAACATAGATCAAACGCACAAGGCAAAATAATGCACTCTGAATTTGGGAACACTCAAACTCACACAAGTAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCAGCTTTAAACCATGCCTCGTATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCAGGAAATTGA	1755	0.4479	MDAAAEPGPSSELRLNGASEDPNRSGSGQNLTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRKLQQTVHGSKAFAASATFAVTTSCFSNNTVDDRKSSFFEFKPLNRLNMVPADFNNRAIKQSTQVEGLGKAQSFVSSPLVESEIAVPANELSLSSPVQMVSSCPSASVDVDLDDVNHKGNTATGLQASHVDVRGSGLSVATEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTIMSIQVERSDKGSSLAGLDDKAPSMYGQLSHAAEPNSASEPSHVATNGDGLEGVGFVSNRIGDDADDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSAAEHRSNAQGKIMHSEFGNTQTHTSNSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSDGPALNHASYPCPQSMGRILMGPGN*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g2841	584	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	27	562	-	-
	Pvu8g2841	584	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pvu8g2841	584	SMART	WRKY_cls	404	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	SMART	WRKY_cls	228	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	ProSiteProfiles	WRKY domain profile.	223	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	MobiDBLite	consensus disorder prediction	327	341	-	-
	Pvu8g2841	584	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	27	562	IPR044810	GO:0003700
	Pvu8g2841	584	MobiDBLite	consensus disorder prediction	16	30	-	-
	Pvu8g2841	584	MobiDBLite	consensus disorder prediction	326	346	-	-
	Pvu8g2841	584	ProSiteProfiles	WRKY domain profile.	399	464	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	Pfam	WRKY DNA -binding domain	405	461	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	Pfam	WRKY DNA -binding domain	229	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	MobiDBLite	consensus disorder prediction	552	584	-	-
	Pvu8g2841	584	SUPERFAMILY	WRKY DNA-binding domain	224	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	SUPERFAMILY	WRKY DNA-binding domain	396	464	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	Gene3D	WRKY domain	219	288	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2841	584	Gene3D	WRKY domain	389	465	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g2841	Pvu-Chr8	58435600	58441263	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g2841	38	582	WRKY Transcription Factor Family	AT4G26640	54.891	1.01e-179	516

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pvu8g2841		WRKY	1.5e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g2841	-		-	gmx:100816583	1033.86

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g2841	8	58435600	58441263	Pvu8g2841	8	58435600	58441263	ECH
	Pvu6g0558	6	16845731	16851077	Pvu8g2841	8	58435600	58441263	PCT