Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2837 ATGGCTAACTGGGCATGGTTGGTGGCAGAACAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGGATTTCCTGGGACACTGACGAGGAACGTCTCAGAGAATATTTTGGGAAGTATGGAGAGGTAATAGAGGCTGTGATCATGAGAGATCGCACAACAGGTCGCGCTCGCGGTTTCGGTTTTGTTGTCTTTTCGGATCCTGTTGTTGCTGAAAGAGTCATCATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGACGATCAGATCACTGTAAACAGACAGCAGACTGGTGGCATCCAAGGATCTCCAGGTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACAGAGAGTGATTTTAAAAAGTACTTTGATCAATTTGGTACAATTACTGATGTTGTTGTAATGTATGATCACAATACCCAGAGGCCGAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCGCCTGGACCTAGCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAGGGTTTCAACATGAGCCCAATTGGAAATTATGGAGTCAAGATGGAAGGAAGGTTTAGTCCACTTACTACTGCTAGAAGTGGATTTACCCCATTTGGCTCCAATGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCTGGTTATGGTGGCAGTCTTGGATATGGTCGGATAAGTCCCCTGTACAATGGCAACCCAAACAGATATACCACTCCTATTGGCAATAACGGTGGAAGTGGGAGAACCGATTCTCTAATGAACTCAGCTTCTAGGAGTGTTTGGGGAAATGGGGGCCTGAACAGTGCTGCCAATAATCCAGCCAGCCCTGGCACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATCGGAAATAGTGGAGCAAATTGGGGTTCATCAGTTCCAACCCAGGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAACACTTATGAAGGTGGTGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAGTCCAAGTGTGCCTCAATCCTCAACATTTACAGCACCAACTGGTGGTTATGAAGGATCTTATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCAGTCTGCTGCTTCTGAAATGGATGCTTCTGGTTCGTTTGGTTATGGTGGGCTTGGTGGTATGGCTTCAGATGATCCAGTAAAGAGTTCTGAAGGTTTTATTGGAAACTACAATGTAATAAGTAGACAAACTAATAGAGGAATTGCTGCGTAG 1473 0.4535 MANWAWLVAEQMESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFSDPVVAERVIMDKHIIDGRTVEAKKAVPRDDQITVNRQQTGGIQGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLNRTSSFLNSYAQGFNMSPIGNYGVKMEGRFSPLTTARSGFTPFGSNGYGMGVNLDSGLNPSYGGTSGYGGSLGYGRISPLYNGNPNRYTTPIGNNGGSGRTDSLMNSASRSVWGNGGLNSAANNPASPGTYLGSGSGAFGVSIGNSGANWGSSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSVPQSSTFTAPTGGYEGSYGDLYRSGSVYSDSTWQSAASEMDASGSFGYGGLGGMASDDPVKSSEGFIGNYNVISRQTNRGIAA* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2837 490 SMART rrm1_1 18 89 IPR000504 GO:0003723
Pvu8g2837 490 SMART rrm1_1 119 191 IPR000504 GO:0003723
Pvu8g2837 490 Gene3D - 117 197 IPR012677 -
Pvu8g2837 490 MobiDBLite consensus disorder prediction 403 417 - -
Pvu8g2837 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Pvu8g2837 490 MobiDBLite consensus disorder prediction 397 417 - -
Pvu8g2837 490 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 12 490 - -
Pvu8g2837 490 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Pvu8g2837 490 CDD RRM2_DAZAP1 116 195 IPR034131 GO:0003723
Pvu8g2837 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 178 IPR000504 GO:0003723
Pvu8g2837 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Pvu8g2837 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 490 - -
Pvu8g2837 490 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Pvu8g2837 490 SUPERFAMILY RNA-binding domain, RBD 117 205 IPR035979 GO:0003676
Pvu8g2837 490 Gene3D - 17 98 IPR012677 -
Pvu8g2837 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2837 Pvu-Chr8 58401461 58405856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2837 16 192 Eukaryotic Initiation Factors Gene Family AT2G23350 24.022 3.21e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2837 K14411 - gmx:100788515 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2837 8 58401461 58405856 Pvu8g2837 8 58401461 58405856 ECH
Pvu6g0555 6 16788046 16792363 Pvu8g2837 8 58401461 58405856 PCT