Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2820 ATGGCATCTTCTTCAAACTCATGGATGAAGGAATATAATGAAGCACTGAAACTTTCTGATGATATCAGTGGTATGATTTCTGAGCAGAGTTCATTTTCTGCATCTGGACCAGAAATCCAGCGTCATTCAACTGCTATAAGGAGGAAGATTACTATATTGGGTACCCGGCTTGATAGCTTGCAATCTCTATTGTCCAAATTTCCTGGAAAGCAGCCCATATCTGAGAAGGAGATGAATCGCCGCAAGGACATGCTCGCGAGTTTGAGATCAAGAGTCAATCAAATGGCTTCCACATTGAACATGTCAAACTTTTCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCAATGGCCAGAACTGTTGGCATGGACAACAATGGACTTGTCGGATTTCAACGGCAACTAATGAAAGAACAAGACGAGGGCCTTGAGCAATTGGAAGAGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGTTGGGTTTACACACCAGACTCATTGATGGCTTGGACCAGCATGTAGATGTCACAGATTCTCGCCTTAGGAGAGTGCAGAAGAACTTAGCAGTTTTAAATAAGCGAACCAAGGGTGGTTGTTCCTGCCTCTGCATGCTTTTATCAGTGGTTGGTATAGTGCTTTTAGTTATTGTGATTTGGCTATTGGTCAAATATTTGTGA 699 0.4192 MASSSNSWMKEYNEALKLSDDISGMISEQSSFSASGPEIQRHSTAIRRKITILGTRLDSLQSLLSKFPGKQPISEKEMNRRKDMLASLRSRVNQMASTLNMSNFSNRDSLLGPEGKPDAMARTVGMDNNGLVGFQRQLMKEQDEGLEQLEETIASTKHIALAVNEELGLHTRLIDGLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVVGIVLLVIVIWLLVKYL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2820 232 PANTHER SYNTAXIN 1 225 IPR045242 -
Pvu8g2820 232 Coils Coil 146 166 - -
Pvu8g2820 232 SUPERFAMILY t-snare proteins 30 100 IPR010989 GO:0016020|GO:0016192
Pvu8g2820 232 Gene3D - 138 200 - -
Pvu8g2820 232 SMART tSNARE_6 131 198 IPR000727 -
Pvu8g2820 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Pvu8g2820 232 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 225 - -
Pvu8g2820 232 Pfam SNARE domain 173 224 IPR000727 -
Pvu8g2820 232 CDD SNARE_Qc 139 196 - -
Pvu8g2820 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2820 Pvu-Chr8 58266502 58270225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2820 1 232 SNARE and Associated Proteins AT1G16240 71.674 1.17e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2820 K08503 - gmx:100782666 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2820 8 58266502 58270225 Pvu8g2820 8 58266502 58270225 ECH
Pvu6g0510 6 16380924 16385067 Pvu8g2820 8 58266502 58270225 PCT