Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2817 ATGGAGACGGAGGAGGAGCTCGTCGATCCCACACCGGAGGACCAGTCCTTGCCGCTTCAGAACGGGGACTCTGACGACCGCTCTGCCAAGAAGCCCAAGGTTGATGCCGACGACGAATTGAAGAGAGTGGCGGAGATTGTGCTCGTTCTCTCCACCATGGCCACGGTGCGCGCGGGGAGGAAGCCTTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCCAGGCTCGCCGGCCTCTGCCAGGGTTTGGCTCCCAAGGATATCGTCGCCAGGGAAGCAATTGGCACCGTCATCGAGGATCTCGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCTATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCGTCGACAACACATACATCTCAACCCTTACAACCAAACATTAGTGAACCTGTTGACAATCGTGTGCCGTCACATGTTGTTCGAATTTTTCCTTCTGATAAATCAAGCCAACAAGCAATCCCTTCTATGGGTCCCGTGGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGTCAACTGGCAACGAAATAAGACCACCTGTGGTTTCTGGTGTGATGCCTAGTGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGTTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATATGCTGCAAGTCCAAGCAAATTCATCAGCGAACCAACCTTTGGTGAATGCTCCAACATGGTCTATGCAGACTCATGCTGCTCCAATAGCAAGAACGGCATCCGAAAACAAGGTGCCTGCTACAAACTCTGTGAAGGCTGAAGGAACATCTGATGCAACCGTATCAAGGGCAGGGCCTCAAATAGCAACAGACCAGAGCTTTAGACCGTTTATCACTCAAACAGCTTCTGTAAATTTGCCTAGTGTGCACCAGCCATTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACTACCAAAGCTTCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTTCATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAATGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTCTGCCTCCAAAGTATGGTCGTGTCATGAGATCCTCAAACACACCACCAAAATTGCCCTCTAATACCTGTGGTTTGCAAGCTTGTTTTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAGCAAATGGGAGCAGTGTTCCAACTGTTGTCAGTGTCAATCACAATGTTGAGGTGGCATGTTACTCAAAGTTCCCTGATACCAAAGGTATTCAAGGGATTGGCATTTCATCTAGTATTGAAGCTATCGATAAGACGCCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCTTCTAGTCCTTCTATTGGCTTGCTAGGTGAATGCTCTACTAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAATGTGAGTCTCTTCCTAATTTGTCTGAGCTGGCTAGATGTGATAGTATGCAATCATCACAAGACTTTCAAGTGGAACAGACAATGTCAAAAGACAACGCTGAAGTATCACCGGAAAAACACATTGATAGTAATATTATGAATAATAATCAGAAGGACTCTCTTGAAGGGGAAAATTTAACTTATGATATCAAGCGTGATGACCAAGATGCTGCACTTGCAAACAATGTTGGAATTTCTGGAACTAATTCTGAACGTAGACAGCACCCTGTATTATCTTCAGATAGTTCACATGCTGTAGACTGGATTGGTGATGTAGTGCAACTAGCAGATGAGAAGATTTTTTATCAATCTTGTTGTGTTGATGGAGTATCATATAGGCTACAGGGTCATGCTCTTTTTCCTACCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGCGTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCTATTCAAGGTCCATGTGAAGTCCTTCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAGTTAGGAATTGAGGAATGTACTAGAATACAGCCCATTTTCCTATGCAGGTGGTTTTATGATGAATTCAAAAAGTTATTTCAACCTGTAATCAGTTGA 2475 0.4469 METEEELVDPTPEDQSLPLQNGDSDDRSAKKPKVDADDELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARARLAGLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQPNISEPVDNRVPSHVVRIFPSDKSSQQAIPSMGPVVSIPPHVSAGSSAVLQYQSTGNEIRPPVVSGVMPSGHLGRNSSSLVLPKVEHPQFKVDGGSNGSSYMLQVQANSSANQPLVNAPTWSMQTHAAPIARTASENKVPATNSVKAEGTSDATVSRAGPQIATDQSFRPFITQTASVNLPSVHQPLQATNIVQPPLIPSHTDIAKVVQKVLLPKLPSHPTWIPPSRDYMNKALTCQMCELSVHEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTCGLQACFENKAENIEPKVLQMVANGSSVPTVVSVNHNVEVACYSKFPDTKGIQGIGISSSIEAIDKTPDPNNSMKSLSAASSPSIGLLGECSTKQINSKVLTSKETSECESLPNLSELARCDSMQSSQDFQVEQTMSKDNAEVSPEKHIDSNIMNNNQKDSLEGENLTYDIKRDDQDAALANNVGISGTNSERRQHPVLSSDSSHAVDWIGDVVQLADEKIFYQSCCVDGVSYRLQGHALFPTSNGKLAPSKLQSMWEDCKTGVKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSDKFKQENDRRCQLGIEECTRIQPIFLCRWFYDEFKKLFQPVIS* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2817 824 CDD PHD_SF 387 435 - -
Pvu8g2817 824 ProSiteProfiles BAH domain profile. 696 823 IPR001025 GO:0003682
Pvu8g2817 824 MobiDBLite consensus disorder prediction 140 159 - -
Pvu8g2817 824 ProSiteProfiles Zinc finger PHD-type profile. 385 438 IPR019787 -
Pvu8g2817 824 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 823 - -
Pvu8g2817 824 Gene3D - 675 823 IPR043151 -
Pvu8g2817 824 ProSitePatterns Zinc finger PHD-type signature. 388 435 IPR019786 -
Pvu8g2817 824 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 823 - -
Pvu8g2817 824 MobiDBLite consensus disorder prediction 283 311 - -
Pvu8g2817 824 MobiDBLite consensus disorder prediction 1 36 - -
Pvu8g2817 824 MobiDBLite consensus disorder prediction 138 159 - -
Pvu8g2817 824 Pfam PHD-finger 388 436 IPR019787 -
Pvu8g2817 824 SMART PHD_3 387 436 IPR001965 -
Pvu8g2817 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 449 IPR013083 -
Pvu8g2817 824 CDD BAH 695 818 - -
Pvu8g2817 824 SUPERFAMILY FYVE/PHD zinc finger 378 443 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu8g2817 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2817 - - gmx:100807139 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2817 8 58240220 58248341 Pvu8g2817 8 58240220 58248341 ECH