Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2792 ATGGTTGAAGCCGTGGAAATCGAAGAAAGGCCAAAATTCAGAGATATTAGACGTTATTTCTGCCAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTAATTACCTCTCACATCAATTCGCACCACAAGGAAGAGGATGAGAAGGCAAGAAAAGAAAGAGATCCTGAAGAAGAGTCTTCGAAATCCCACACCTGCGAGGACTGTGGCATCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGAGGCCGTTTGTGTGTGCGCTTGATGATTGTCAAGCGAGTTACAGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACTTTCAAGTGTCCTGTTGTGAATTGCAACACTGAGTTCTCTTTGCTGAGCAATATGAAAAGACACGTTGAGGAGATTCACGATGACAGTTCTCCTGCAGTTACTGACAAAAGTCACAAACAACATGTGTGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATTTGCTTCACAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTGGATGTGGTGTGCTTAGAGCCTGGTTGCATGATGCATTTTACTAATGTCCAGTGCCTTAAAGCCCATGTAAATTCCTCTCATCAATATATGACCTGTGACATCTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAACCTGACAGCAGTTCCTTAGAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAATAAATCTAATCTTGACAAGCATAAGAAGGTCGTGCACCTTAAAGAAAAACCTTTTCTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAAACACGAAAAAACCGTTAAACATGTTTTTACCCTTGGTGATTTTGAAGAAGCTGATGAAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAAAATGTCCTACCGTTGAAATGTTAATCAGGAAGAGGGTTACCCCACCTAGTCAATGGGAGGATTGGTTATTTATGCAGGATAGTGAGTAG 1086 0.4291 MVEAVEIEERPKFRDIRRYFCQYCGICRSKKTLITSHINSHHKEEDEKARKERDPEEESSKSHTCEDCGITFKKHAYLLQHMQSHSLERPFVCALDDCQASYRRKDHLTRHLLLHEGKTFKCPVVNCNTEFSLLSNMKRHVEEIHDDSSPAVTDKSHKQHVCPEIGCGKVFRFASQLKKHEDSHVKLESVDVVCLEPGCMMHFTNVQCLKAHVNSSHQYMTCDICGSKQLKKNIKRHLRSHEPDSSSLETFQCEFKGCSCTFSNKSNLDKHKKVVHLKEKPFLCGFPDCGMRFAYKHVRDKHEKTVKHVFTLGDFEEADEEFRSRPRGGRKRKCPTVEMLIRKRVTPPSQWEDWLFMQDSE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Pvu8g2792 361 PANTHER - 9 349 - -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Pvu8g2792 361 MobiDBLite consensus disorder prediction 38 63 - -
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Pvu8g2792 361 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 63 85 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 91 115 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 282 308 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 120 145 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 251 276 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 19 41 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 160 184 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 192 217 IPR013087 -
Pvu8g2792 361 SMART c2h2final6 220 241 IPR013087 -
Pvu8g2792 361 Gene3D Classic Zinc Finger 158 242 - -
Pvu8g2792 361 Gene3D Classic Zinc Finger 247 325 - -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Pvu8g2792 361 Gene3D Classic Zinc Finger 6 91 - -
Pvu8g2792 361 Gene3D Classic Zinc Finger 92 116 - -
Pvu8g2792 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Pvu8g2792 361 PANTHER ZINC FINGER PROTEIN 9 349 - -
Pvu8g2792 361 SUPERFAMILY beta-beta-alpha zinc fingers 71 124 IPR036236 -
Pvu8g2792 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Pvu8g2792 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Pvu8g2792 361 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Pvu8g2792 361 Pfam Zinc finger, C2H2 type 251 276 IPR013087 -
Pvu8g2792 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Pvu8g2792 361 SUPERFAMILY beta-beta-alpha zinc fingers 233 290 IPR036236 -
Pvu8g2792 361 Gene3D Classic Zinc Finger 117 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2792 Pvu-Chr8 58040008 58042397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2792 87 311 C2H2 Transcription Factor Family AT1G72050 50.903 3.34e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g2792 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2792 K09191 - gmx:100801812 660.218