Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2767 ATGCCTTCAGCTCAAGATCCATTCTATGTTGTGAAGGAGGAGATTCAAGAATCTATTGATAAGCTGCAATCTACTTTTCGGCAATGGGAAAAAGCTGCTGATGCTGGCGAGCGATCCAATCTTTCAAAGGAAGTTCTTACTAGCTGTGAAAGCATTGATTGGCAGGTAGATGAATTGGACAAAGCGATATCTGTGGCATCTAGAGATCCTTCTTTGTATGGCATTGATGAAGTGGAGCTTGAGAACCGGAGGAGGTGGACCAGTGAAGCTCGTAGCCAGGTGAGCACAGCAAAGAAAGCAGTGGAAGCAGGAAAACGCTCAAATATAACAAACAATGCTAGTCTAAATGGGATGCACAGGGAATTAATGAGGCTTCCTAATTCTCATCAAACTGCCTCTGGCCAATATCCTACCCAGGATAATGATGATTTCATGGAATCAGAATCGGACAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAGCTTACTGTAAGTATACAAAGAATTGGAGGTGTTGGACTTACTATACACGAAGAGCTCCTTGCACAGGAGAAGATTGTTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTCATGAAAAAGGCTAGCGCAAAGGGCCAGATCATGATGATCCTGGGTTTGCTGGCTCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 738 0.4295 MPSAQDPFYVVKEEIQESIDKLQSTFRQWEKAADAGERSNLSKEVLTSCESIDWQVDELDKAISVASRDPSLYGIDEVELENRRRWTSEARSQVSTAKKAVEAGKRSNITNNASLNGMHRELMRLPNSHQTASGQYPTQDNDDFMESESDRQMLLIKRQDEELDELTVSIQRIGGVGLTIHEELLAQEKIVDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2767 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Pvu8g2767 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Pvu8g2767 245 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Pvu8g2767 245 Pfam SNARE domain 190 241 IPR000727 -
Pvu8g2767 245 CDD SNARE_Qc 156 213 - -
Pvu8g2767 245 SMART tSNARE_6 148 215 IPR000727 -
Pvu8g2767 245 Coils Coil 191 211 - -
Pvu8g2767 245 Coils Coil 12 32 - -
Pvu8g2767 245 Gene3D - 2 104 - -
Pvu8g2767 245 PANTHER SYNTAXIN PROTEIN 1 244 - -
Pvu8g2767 245 PANTHER SYNTAXIN 1 244 IPR045242 -
Pvu8g2767 245 Gene3D - 160 224 - -
Pvu8g2767 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2767 Pvu-Chr8 57856424 57860189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2767 53 245 SNARE and Associated Proteins AT1G28490 67.010 2.24e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2767 K08500 - gmx:100793612 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0464 6 15778367 15782429 Pvu8g2767 8 57856424 57860189 PCT