LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g2766	ATGGTTGAAGTGGGAATTTTTCAGATCACAGGTAACAGTTTCGACCCATTTGCTGAGGCTACAGATAGAGATGCCCCCGGGGCGAAGGAGTATGTGCATATCCGCATACAACAGAGGAATGGGAAGAAGAGTTTGACGACAGTGCAAGGGCTGAGGAAAGAGTTCAGCTATGAGAAGATCCTGAAAGACCTGAAGAAAGAGTTCTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGAAAGATTATCCAACTTCAAGGTGATCAACGCAAGAACGTTTCTCACTTCCTCATTCAGGCTGGCCTTGTTAGGAAGGACCAGATCAAGATTCATGGTTTTTGA	345	0.458	MVEVGIFQITGNSFDPFAEATDRDAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIQAGLVRKDQIKIHGF*	115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g2766	114	CDD	eIF1_SUI1	30	113	IPR005874	GO:0003743
	Pvu8g2766	114	PANTHER	PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG	1	114	-	-
	Pvu8g2766	114	TIGRFAM	SUI1_MOF2: translation initiation factor SUI1	12	114	IPR005874	GO:0003743
	Pvu8g2766	114	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	1	114	-	-
	Pvu8g2766	114	SUPERFAMILY	eIF1-like	9	114	IPR036877	GO:0003743\|GO:0006413
	Pvu8g2766	114	PIRSF	Transl_init_SUI1_Euk	3	114	IPR005874	GO:0003743
	Pvu8g2766	114	Pfam	Translation initiation factor SUI1	29	102	IPR001950	GO:0003743\|GO:0006413
	Pvu8g2766	114	Gene3D	-	5	114	-	-
	Pvu8g2766	114	ProSiteProfiles	Translation initiation factor SUI1 family profile.	32	102	IPR001950	GO:0003743\|GO:0006413

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g2766	Pvu-Chr8	57854157	57855548	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g2766	1	114	Eukaryotic Initiation Factors Gene Family	AT5G54940	78.947	2.79e-62	183

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g2766	K03113		-	gmx:100499676	210.69

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu8g2766	8	57854157	57855548	Pvu8g2766	8	57854157	57855548	ECH
	Pvu6g0459	6	15726594	15728126	Pvu8g2766	8	57854157	57855548	PCT