Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2716 ATGAAGTGGGAAACTGTAGCCCTTTCTCCTACACCTTGCTCTCCAAACTCCAACACCAATTGGTTGGTGGAAAATAATAGGAGCACAAAATGGACCCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTACATGATAAAGACACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTAGTTGATGTGATCAAGCAGTACAAGGAACTGGAAGTTGATGTTAGCAATATAGAAGCTGGGTTAATCCCAGTTCCTGGCTATAGCACTGCTACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGGTTCAAAGGAAGTGGAAAGAGATCATCCTCAGTGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTCTGAAGAAGTATGGAAAAGGTGATTGGAGAAATATTTCTCGCAATTATGTGATCACTAGAACCCCAACACAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATACATGACATAACAACAGTGAATCTCACAGAAACCACCACAAGTTCTTCAGAAGACACCAATAGATCCACCTCACCTCATGTGCTCTCACAGCAGCAGCAGCCAAATTCTACTCCAACTACACCAAGAACTCATTTTCAGTGGAGTAACCAGTCAAGCACAGGAGTAGCTATGACTTTCAACCCTGTTCATGAAAGAGTCTTCATGTCTCCCTATGGTGCTAACTCCTTTGGGGTTAAAATGGAAGGAAGGAATCTGCATAATGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTAG 915 0.4393 MKWETVALSPTPCSPNSNTNWLVENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVVDVIKQYKELEVDVSNIEAGLIPVPGYSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTSSSEDTNRSTSPHVLSQQQQPNSTPTTPRTHFQWSNQSSTGVAMTFNPVHERVFMSPYGANSFGVKMEGRNLHNESSYLGPQTQNMVFQMQQSSQH* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2716 304 SMART sant 27 79 IPR001005 -
Pvu8g2716 304 SMART sant 132 182 IPR001005 -
Pvu8g2716 304 MobiDBLite consensus disorder prediction 204 244 - -
Pvu8g2716 304 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Pvu8g2716 304 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Pvu8g2716 304 MobiDBLite consensus disorder prediction 120 134 - -
Pvu8g2716 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Pvu8g2716 304 MobiDBLite consensus disorder prediction 114 134 - -
Pvu8g2716 304 Coils Coil 303 304 - -
Pvu8g2716 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR043363 -
Pvu8g2716 304 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pvu8g2716 304 SUPERFAMILY Homeodomain-like 29 81 IPR009057 -
Pvu8g2716 304 CDD SANT 135 180 IPR001005 -
Pvu8g2716 304 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 283 - -
Pvu8g2716 304 Gene3D - 23 90 - -
Pvu8g2716 304 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Pvu8g2716 304 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pvu8g2716 304 Gene3D - 134 184 - -
Pvu8g2716 304 CDD SANT 30 76 IPR001005 -
Pvu8g2716 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pvu8g2716 304 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Pvu8g2716 304 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2716 Pvu-Chr8 57517432 57519437 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g2716 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2716 - - gmx:778034 536.569