Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2696 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAAATCGGTTTGGTGATGGAGGAAGAGTGTGGAAAAGAAGGGATGCATCACAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGAGGCGGTTGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAGAATAGGTTATGAAGAGAGGACTGCTCTCATGGTTGCTTCTACGTTTGGAAGCCTTGATGTGTCAGCTTATATTCTTGGAACTGGTCGTGTTGATGTTACCCGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGCTCTGCTGCTTCTGTTGAGATTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTTTCTGTGGCTAATTCTATTTTCAGTCCAAGGGCCAGGGTGCTGCAGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGATCAGACATGTTTCTCACTTCCACAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAACGACCACACCCCGTGTTTCCAAAGATTATCCCATTGATCTCTCCCTTCCTGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAACGCAAGGCGACGTGATCCAAGGAAGTACCATTACAGCTGTGTCCCTTGTCCTGAGTTTCGCAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATATTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACCAGGCTCTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCACACAAGGCGGAGGAGCTTCGTCCCTTGTATGCTTCTACAGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTATCAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCAATCTTGATACCTCCTGCCTCAAAACCACCTTTGACTCCATCTGGGGCATCTTCTCCGGTTAATGGTTCCATTTGGTCTCAATCTAATGTTGCAGTCCCCACCCTGCAGCTGCCCAAAAGCAGATTGAAGGCTGCATCAGCTGCAAGAGACGTTGATTTGGATTTTGAACTGCTTGGACTTGAAGCTCATCGGCGTAGACAACAGCTAATGATGGATGAGATGTCTGGTCTTTCCTCTCCCACCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCGTGTTTCTCTGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGTGATGCCTTCCAACCTTGAAGATACTTTTGGATCTCCTGAATCATCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCGAACATGAACCAGCAGCTGGGAGGCTATTCATCGGGCCTTTCCATGTCAAACATGGTTGAATCGAGACCCTTCAGGGTTGATCCATCTGCTGAAGGAGCCTCAGTGGCTTTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGTAGCCACAGCTTTATCGAGCGAAGCATGGTGAACCATCATTCTGAGCTTCCTTCTCCAAAGCTCTCCACCTTCTCCAACTGGGGCTCACCTGATGGAAAACTTGATTGGGCCATAAATGGAGATGAGCTGAATAAACTGAGGAAATCTGCCTCCTTTGGATTCCGAAGCAGCAACAGTTCCATCACAGTGGCTTCAACCAAAATGGCAGCAAATGTTGATGATGAGCCAGACGTGTCTTGGGTTAACTCACTTGTCAAGGATGCTCCACCAGAATCTGGGGTCGAAGATCAGCCAAAACAATGCCATAATGGAACAGAAACAATTCCAGCGTGGATGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCATGA 2070 0.4763 MCGVSKGKPSQIGLVMEEECGKEGMHHRISALLEFSAADDLIGFKEAVEKEGHDVDGVGLWYGRRAGSKRIGYEERTALMVASTFGSLDVSAYILGTGRVDVTRASRSDGATALHCAVAGGSAASVEIVKLLLDASADVSAVDADGNRPIDLIVSVANSIFSPRARVLQALLEGTCDAADQTCFSLPQVIDQIEEQRQETTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKAEELRPLYASTGSAIPSPRSYSISASALEMGSVSPIALGSPSILIPPASKPPLTPSGASSPVNGSIWSQSNVAVPTLQLPKSRLKAASAARDVDLDFELLGLEAHRRRQQLMMDEMSGLSSPTNWKNSMPNSPSFRVSLSDHIGELNRLSGVMPSNLEDTFGSPESSILSKFHGISLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSMSNMVESRPFRVDPSAEGASVALNPRAAAFAKRSHSFIERSMVNHHSELPSPKLSTFSNWGSPDGKLDWAINGDELNKLRKSASFGFRSSNSSITVASTKMAANVDDEPDVSWVNSLVKDAPPESGVEDQPKQCHNGTETIPAWMEQMYLDQEQMVA* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2696 689 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Pvu8g2696 689 PANTHER UNKEMPT FAMILY MEMBER 21 688 IPR045234 -
Pvu8g2696 689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 688 - -
Pvu8g2696 689 Pfam Ankyrin repeats (3 copies) 67 142 IPR002110 GO:0005515
Pvu8g2696 689 ProSiteProfiles Zinc finger C3H1-type profile. 272 294 IPR000571 GO:0046872
Pvu8g2696 689 SMART ANK_2a 74 104 IPR002110 GO:0005515
Pvu8g2696 689 SMART ANK_2a 109 141 IPR002110 GO:0005515
Pvu8g2696 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 292 IPR000571 GO:0046872
Pvu8g2696 689 Gene3D - 29 178 IPR036770 -
Pvu8g2696 689 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Pvu8g2696 689 Gene3D - 268 330 - -
Pvu8g2696 689 SUPERFAMILY Ankyrin repeat 70 158 IPR036770 -
Pvu8g2696 689 SMART c3hfinal6 302 325 IPR000571 GO:0046872
Pvu8g2696 689 SMART c3hfinal6 267 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2696 Pvu-Chr8 57343489 57346732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2696 1 684 C2H2 Transcription Factor Family AT5G12850 38.208 1.63e-141 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu8g2696 Ank_2 1e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2696 - - gmx:100795085 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2696 8 57343489 57346732 Pvu8g2696 8 57343489 57346732 ECH