Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2688 ATGGAAAATGGTGGCATGTCAAACTTGTTGGATAGCAATAAAAAAAGTGGTAGCATCATTTGCTTTCAAGAGGAATACGATAGAGATCCTTTGATGGATGGGCCATCAGAGAAGAAACTTATTTGGCTGGAGGAACCTGTATCTCCTGTTCAGAAGATCATGCCTGATGCTGGTGAAGTAAATCCGGGTGCTAGCTGCTGTTCAAGAAAGAGAAAACGCAGACGCTCAGTGTCCATTCGTTGGAAACCTATGGTAGTGGCCGAGGTTGAATTCTGTCCTGATGTTATTAACCAGTATTTACTTGGATGTGGTAGCAAGTCCATTAGGGAACTTTTGAAGACTAAAGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAGACATACTCCTGGACGTGGACGCTACAGGTACAAGTCACCTGATGCACAGGACGAGAAGTTTTACACTTCAATTATTCAAGTTTTGACACATATGCAATTGGAGTCCAACATGAACACTATGCAGCCCCAAATTGATCACAGTAGGATGGGTTCTGCAAATGACACTAATCTTTCACTTCTGCTTTCAGACCAACCAAATGACCAGGATCTTGATGTTTGTCCTCCAAATGAGGGAAGTGTTGGGCATGTTGATAGCAATGATCTATCGCAAACCTTGTCCCAATTTCTTCAAAAAGAACCTGAATTGCATACTGCTTCACCAGCAAGTAGGTCAACTGAGAATAGAAACCATAAACACGCCAGGAATTCAGAAGCCATCATGCCAAAGTGCCACATGAAAGGGTCACGTAGAGAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCCCCAAGTGTGTCACACCAACGACCTCAAAATGTTCTGTCTTGGTTAATAGATAAGGGCGTGCTGATGCCAAGATGTAAGGTCTATTACTGGGCAGAAGGAGGCAGTAACACTGATTTAGCTCAGGGGAGGATTACTTATGATGGAATTAAGTGTAGCTGTTGCCAGAAAATATATGGTATTCGGTGCTTTGTAAATCATGCTGGTGGAAGTGGTGTCAGCAGGCCTTCTGCTTGCATATTTTTGAAGGATGGTAGATCACTCTTAGATTGCATGGTAGAAGTCATGCACGATAGTAGAACAAGGGAAGATATGAACAGACCATGCAATGATCTGTTTGGAGGAGAAAATGACGATATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATTTTATGCGACAGATGTCCATCTGCATTTCATAGGACATGTCTTGGTTTGAATGATGTCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCGATTTGCAGCCAAATCAAAACAGAAGGGTCTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACACAAATATCACGTTGGATGCTTGAAAAATAGGGAAAAAGATGAGTCAAGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTCCAAAATCTATTAGGAAAGCCACTTATTGTGGGTCCGAACAATCTAACTTGGACACTGGAGAAGTTTAACAACTCTGACAGTCCTGATGTTGGCAGTTCTCTGAATGACTTATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTAAAGAACCCTCTCACTGGTAGAGATATCATTGATGATGTTATGTTCAACTCTAGGTCAGAGCTCAATCGATTGAATTTCCAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAACTGATTAGTGTAGCAACTATTAGGATTTTTGGAGACAAAGTAGCTGAGGTACCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAGCTTGAGAAGAACCTCATGCAACTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGACAAATTTCGATAGGTCACAGTTCTTGGACTGTGCTTTCCTAGATTTTCAGGAAACCGTCTTGTGCCAGAAGTTGTTGACAAGGATTCCATCTCCCCAGTCAGGCTTAACAAGAGAAACACAACGAAAACCACATGATCTTTTGAGTCTTAAATGTAGAATTGAGTTTGACAAGTCGAGTTCAGCATCAGAAGTAGACCAACATGAAGAGATAGACAAAAGTAGGATGGATCAACAGGGGTTGGAGTGTGTCTCTACTCCTCCAACTTCCTGA 2289 0.4194 MENGGMSNLLDSNKKSGSIICFQEEYDRDPLMDGPSEKKLIWLEEPVSPVQKIMPDAGEVNPGASCCSRKRKRRRSVSIRWKPMVVAEVEFCPDVINQYLLGCGSKSIRELLKTKVWKHLAYLGWKIEWTEDRHTPGRGRYRYKSPDAQDEKFYTSIIQVLTHMQLESNMNTMQPQIDHSRMGSANDTNLSLLLSDQPNDQDLDVCPPNEGSVGHVDSNDLSQTLSQFLQKEPELHTASPASRSTENRNHKHARNSEAIMPKCHMKGSRRECLRSSKRVLSAPSVSHQRPQNVLSWLIDKGVLMPRCKVYYWAEGGSNTDLAQGRITYDGIKCSCCQKIYGIRCFVNHAGGSGVSRPSACIFLKDGRSLLDCMVEVMHDSRTREDMNRPCNDLFGGENDDICSVCQYGGELILCDRCPSAFHRTCLGLNDVPHGDWFCPSCCCAICSQIKTEGSEDVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWLCGKECEQIYAGLQNLLGKPLIVGPNNLTWTLEKFNNSDSPDVGSSLNDLLAEKYSKLSVALSVMHECFDPLKNPLTGRDIIDDVMFNSRSELNRLNFQGFYTVLLEQNEELISVATIRIFGDKVAEVPLVGTRIQYRRLGMCRILMNELEKNLMQLGVERLVLPAVPAVLETWTKSFGFAQMTNFDRSQFLDCAFLDFQETVLCQKLLTRIPSPQSGLTRETQRKPHDLLSLKCRIEFDKSSSASEVDQHEEIDKSRMDQQGLECVSTPPTS* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2688 762 Pfam PHD-finger 401 443 IPR019787 -
Pvu8g2688 762 MobiDBLite consensus disorder prediction 232 255 - -
Pvu8g2688 762 CDD NAT_SF 593 653 - -
Pvu8g2688 762 SUPERFAMILY FYVE/PHD zinc finger 384 441 IPR011011 -
Pvu8g2688 762 MobiDBLite consensus disorder prediction 730 762 - -
Pvu8g2688 762 ProSiteProfiles Zinc finger PHD-type profile. 399 444 IPR019787 -
Pvu8g2688 762 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 588 676 IPR016181 -
Pvu8g2688 762 MobiDBLite consensus disorder prediction 730 749 - -
Pvu8g2688 762 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 537 699 IPR000182 GO:0016407
Pvu8g2688 762 Pfam Tify domain binding domain 324 375 IPR032308 -
Pvu8g2688 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 456 IPR013083 -
Pvu8g2688 762 Gene3D - 568 680 - -
Pvu8g2688 762 PANTHER PHD ZINC FINGER PROTEIN 222 753 - -
Pvu8g2688 762 PANTHER PHD ZINC FINGER PROTEIN 11 210 - -
Pvu8g2688 762 SMART PHD_3 443 495 IPR001965 -
Pvu8g2688 762 SMART PHD_3 401 442 IPR001965 -
Pvu8g2688 762 SMART ring_2 443 498 IPR001841 -
Pvu8g2688 762 SMART ring_2 402 441 IPR001841 -
Pvu8g2688 762 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 11 210 - -
Pvu8g2688 762 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 222 753 - -
Pvu8g2688 762 Pfam Acetyltransferase (GNAT) family 586 669 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2688 Pvu-Chr8 57288733 57292987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2688 247 641 PHD Transcription Factor Family AT5G58610 45.679 2.33e-105 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu8g2688 Acetyltransf_1 0.00013 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2688 - - pvu:PHAVU_008G260100g 1563.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2688 8 57288733 57292987 Pvu8g2688 8 57288733 57292987 ECH
Pvu6g0723 6 18801619 18809614 Pvu8g2688 8 57288733 57292987 PCT