Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2684 ATGACTTCGTGGGTGAGAGGCAAGTGCCTCGGGAAGGGCGCGTTTGGCGTTGTCAACGCCGCGGTTTCCAAAGCTGATGGTCGCGTTTTCGCGGTGAAGTCCGTGGATCGTGGAGCGGGGCTCCCTCGCCAGCTGGAGGCGTTGGAGAACGAGATTCGGATTCTGAAGAACGTGGCGTCGCCGCACGTCGTCGCTTATCTTGGCGACGACGTCACGTGCGAGCTCGGCGGAACGGCGTCGTTTAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGATTTGGACCGCGCTGACTTGGACGAGCGTTCAGTGAGGCGCTACGCGTGGTGCCTCGTGAGCGCCCTGCGTGACGTCCACGCCCGCGGCTTCGTGCACTGCGACGTTAAGGGGAGGAACGTGCTCCTCTCCGGCAACCGCGCCGCCGCGAAACTCGCCGACTTCGGCGCGGCGGTGGAAGTCGGAGCCTCGCCGGAGTTGTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTCGTGCGCCGGGAGCGGCAGGGGCGGGAGTCCGACGTGTGGTCGCTCGGTTGCACGGTGATCGAGATTGTCAACGGGAAACCGGCGTGGGAGGATCGCGGCGTCGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAGTTTCCTAGCAAACTGTCGGAGGTGGGAAAAGATTTTCTCGAGAAGTGTCTGAGAAGAAATTGGAGTGAACGGTGGAGCTGCGATCAGCTACTGCAGCATCCATTTTTGGTTCCCTACGCCGTAGTTGAATCTTCGCCACGTTGCGTTCTGGACTGGGTTGAGTCGGAGTTCGCGGAATCAGAATATAACGACCGCGAACAAGAAAGAGGGTGGTTAGAATTTAACCGCGAGGAAAATTCAGTTAGAAATAGAATTAGTAAATTAGCAACAGTATCGAGGGTGAATTGGGAAACACAGGGTTGGGTAGCGGTGAGGGAAGTTGAGCTAAACGAAGAATCATGGGCATCAACAAGAAGAAGTGAAAGTGAAGATGGGGTAAATTGGGAATTTAGCAATGTGGGGAGATATTCGGAATGTTGGCACTGTGGAGGGGTAAATCGGGAAATAGAAAAGTTTGATGAGGAGCGTAACAGAGGTGGAGATTGGATCTGTGATGGGCATGGGTTGGAAAAGGTGGGTTGGGTAATGGGAATATTGAGCATTTACAGTTGTAAAACTTTGATGAGGTGTTATTTGTTGTTGTTAATTTATTTAAATATATTATGGTTTTGGGTTATTTATGGTGTTTATCTCTTTACTGCACCAATAAATTGGGTGGATTGTAGAAGAAATTGA 1344 0.535 MTSWVRGKCLGKGAFGVVNAAVSKADGRVFAVKSVDRGAGLPRQLEALENEIRILKNVASPHVVAYLGDDVTCELGGTASFRNLHLEYMPGGTVADLDRADLDERSVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLSGNRAAAKLADFGAAVEVGASPELLPRGSPMWMAPEVVRRERQGRESDVWSLGCTVIEIVNGKPAWEDRGVDTLSRIGYSDELPEFPSKLSEVGKDFLEKCLRRNWSERWSCDQLLQHPFLVPYAVVESSPRCVLDWVESEFAESEYNDREQERGWLEFNREENSVRNRISKLATVSRVNWETQGWVAVREVELNEESWASTRRSESEDGVNWEFSNVGRYSECWHCGGVNREIEKFDEERNRGGDWICDGHGLEKVGWVMGILSIYSCKTLMRCYLLLLIYLNILWFWVIYGVYLFTAPINWVDCRRN* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2684 447 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 358 - -
Pvu8g2684 447 Pfam Protein kinase domain 6 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2684 447 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Pvu8g2684 447 CDD STKc_MAPKKK 3 259 - -
Pvu8g2684 447 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 358 - -
Pvu8g2684 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Pvu8g2684 447 Gene3D Transferase(Phosphotransferase) domain 1 2 332 - -
Pvu8g2684 447 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2684 447 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g2684 447 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2684 Pvu-Chr8 57235811 57237432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2684 4 346 MAP Kinase Kinase Kinase AT1G07150 55.775 8.41e-124 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pvu8g2684 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2684 - - vun:114193591 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2684 8 57235811 57237432 Pvu8g2684 8 57235811 57237432 ECH
Pvu6g0728 6 18894981 18896316 Pvu8g2684 8 57235811 57237432 PCT