Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2661 ATGGGTGGTAATTCTTCCCCTTGTGCTTCCTGCAAGTTCTTGAGACGCCGTTGCTCTCAGGATTGCATCTTTGCTCCTTATTTTCCTTCCAATGATCTCTGCAACTTTGCCATTGTGCACAAGGTCTTTGGCTGCAGCAATATCATCAAAATGCTAAAGGATGTTCCAGTTGATCAAAGAGGAGATGCAGTGAAGAGTTTAGTTTATGAGGCAAATGCAAGAGTCAGAAACCCTGTTTATGGTTGTGTTGGAATCATATCTAACCTAGAAATTCAAGTTTCTGAGTTACAAATGCAGCTTGCAGTAGTTCAGGAAGAGATTCTCAGCATAAAAAAGCAGCAAGAATTTACCTTCACCAATGCTATATAA 369 0.4038 MGGNSSPCASCKFLRRRCSQDCIFAPYFPSNDLCNFAIVHKVFGCSNIIKMLKDVPVDQRGDAVKSLVYEANARVRNPVYGCVGIISNLEIQVSELQMQLAVVQEEILSIKKQQEFTFTNAI* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2661 122 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pvu8g2661 122 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pvu8g2661 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 115 - -
Pvu8g2661 122 Coils Coil 86 113 - -
Pvu8g2661 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2661 Pvu-Chr8 57021563 57022123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2661 1 120 AS2 family AT2G30130 70.248 2.69e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g2661 LOB 8.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2661 - - var:108336689 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2661 8 57021563 57022123 Pvu8g2661 8 57021563 57022123 ECH
Pvu6g0765 6 19261111 19262127 Pvu8g2661 8 57021563 57022123 ECH
Pvu6g0765 6 19261111 19262127 Pvu8g2661 8 57021563 57022123 PCT