Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2622 ATGGCCAAAAGATCGCAGAAAGCCCTCAAGAACACTGACACCAACAGCACTGCCAAACGCACACGCAAAACAGTTCCAAGAGATTCACCACCACAGAGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATTTGTGGGACAAAAACTGTTGGAATGAGTCACAGAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCTGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGTCAAGATACCATTCTCAATTTCCCATTAACAAATTATGAGGAGATGCTCAAGGAAATGGAGGGTCAATCAAAAGAAGAATATATTGGATCTTTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATACCTATATCTTGGAACTTATGCTACACAGGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAGTACAGAGGAGCAAATGCTGTTACAAACTTTGATGTGAGCCGCTACATCAATTGGCCAGGTCCTAAGAGTGAAGAAGAGAATCAAAATGTTCCTGTAAATGAAAATGTAAACTCTAATGCTGAAATTGAACTAGGGTTTGTTTCACATGAACATGGTTCAAAAAGTGATGAGATCACAACAGAGGATGCAGCACAGTCTTCAGAGTCAAACCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAGAGTCAGGGACCAGACATCTACACTGAAAATGATGATATCATTTTTGGTGACTTAGGTTCATTTGGGGCATCGATTTTTCATTACGAGCTTGATGTTTAG 909 0.4213 MAKRSQKALKNTDTNSTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEMLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKSEEENQNVPVNENVNSNAEIELGFVSHEHGSKSDEITTEDAAQSSESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGASIFHYELDV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2622 302 ProSiteProfiles AP2/ERF domain profile. 36 102 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 224 - -
Pvu8g2622 302 MobiDBLite consensus disorder prediction 244 261 - -
Pvu8g2622 302 Gene3D AP2/ERF domain 137 198 IPR036955 GO:0003700|GO:0006355
Pvu8g2622 302 Gene3D AP2/ERF domain 36 104 IPR036955 GO:0003700|GO:0006355
Pvu8g2622 302 SUPERFAMILY DNA-binding domain 137 198 IPR016177 GO:0003677
Pvu8g2622 302 CDD AP2 137 198 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 MobiDBLite consensus disorder prediction 1 36 - -
Pvu8g2622 302 SUPERFAMILY DNA-binding domain 35 103 IPR016177 GO:0003677
Pvu8g2622 302 SMART rav1_2 36 108 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 MobiDBLite consensus disorder prediction 237 261 - -
Pvu8g2622 302 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 Pfam AP2 domain 137 188 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 Pfam AP2 domain 36 94 IPR001471 GO:0003700|GO:0006355
Pvu8g2622 302 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2622 Pvu-Chr8 56759415 56762319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2622 32 200 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.47e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu8g2622 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2622 K09285 - gmx:100807781 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2622 8 56759415 56762319 Pvu8g2622 8 56759415 56762319 ECH