LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g2599	ATGGCTTCTTCTACCGGTAGTTTAGACACCTCTGCAACTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCCTTCATGACCACTTCTTTCTCTGACCTCCTTCTTTCTCCCACAGACACCAAGCCTCAGGGTGCCTTGTCTGAGAGAAATGCCTCTGGTGTCCCCAAATTCAAGTCCACCCCACCTCCTTCTTTGCCTCTCTCCCCTCCTCCCATTTCTCCTTCTTCTTACTTCGCTATTCCACCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCGGTTCTCCTTAGCGCTTCTAACATACTGCCATCTCCAACAACCGGAGCATTTGTTTCTCAGAACTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCTAATTTCTCTTTCCAGCCCCAGCCAAGGCCTCCTGCTTCATCCACACTAACATATCAATCTTCAAATGTTGCAGTTCAAAACCAACATCCATGGAATTTTCAGGAGACCACAAAGCAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCATAGTTTTCCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTGAGCAGAAAGTCAGATGATGGATACAATTGGAGGAAGTATGGCCAAAAACAAGTGAAAGGGAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCAAATTGCCCTACGAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACTAGGAGAAACTCATCGTCTTCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCATCAGCACTGAAATCCAAGATCAATCATATGCCACTCATGGTAGTGGACAAATGGATTCCGCCGCCACCCCAGATAACTCATCAATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCAGGAGGCGATGAATATGATGAAGATGAACCTGAGGCAAAAAGATGGAAAATTGAAGCAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTGAGAGAGCCTAGAGTTGTGGTTCAGACAACCAGTGACATTGATATTCTAGATGATGGGTACAGATGGAGAAAATATGGACAGAAAGTTGTAAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGGAAGCACGTGGAACGAGCCTCACATGACCTAAGGGCTGTGATCACAACTTATGAGGGAAAGCATAACCATGATGTCCCTGCAGCCCGTGGCAGTGGTGGTCATTCTGTTAACAGACCCCTGCTAAACAATGCTGCAAACCCCACCACCACAGCCACTGCCATAAGGCCATTGGCAGTGACCCATCCCACTGACAATTCCGTTCAAACCCAAAGGCCACAAGCACCACCAGAAGCGCAATCACCCTTCACCCTAGAGATGCTACAAGGTCCAGGAAGTTTTGGATTCTCGGGTTTTGGGAATCCAATGGGATCTTACATGAATCAGCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACGTGTTCCTTGAGTCTCTACTATGCTGA	1719	0.4538	MASSTGSLDTSATANSFTNFTFSTHPFMTTSFSDLLLSPTDTKPQGALSERNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLSASNILPSPTTGAFVSQNFNWKSSSGGNQQIVKEEDKSFSNFSFQPQPRPPASSTLTYQSSNVAVQNQHPWNFQETTKQDSFSSGKSMMKTENSSSMHSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLSRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNPISTEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGGDEYDEDEPEAKRWKIEAENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGGHSVNRPLLNNAANPTTTATAIRPLAVTHPTDNSVQTQRPQAPPEAQSPFTLEMLQGPGSFGFSGFGNPMGSYMNQQQLSDNVFSSRTKEEPRDDVFLESLLC*	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	40	71	-	-
	Pvu8g2599	572	SMART	WRKY_cls	231	289	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	SMART	WRKY_cls	403	462	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	SUPERFAMILY	WRKY DNA-binding domain	230	290	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	281	366	-	-
	Pvu8g2599	572	Gene3D	WRKY domain	219	291	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	ProSiteProfiles	WRKY domain profile.	398	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	PANTHER	WRKY TRANSCRIPTION FACTOR WRKY24-LIKE	45	546	-	-
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	174	231	-	-
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	347	366	-	-
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	286	346	-	-
	Pvu8g2599	572	Gene3D	WRKY domain	390	456	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	Pfam	WRKY DNA -binding domain	404	460	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	Pfam	WRKY DNA -binding domain	232	288	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	ProSiteProfiles	WRKY domain profile.	232	290	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	45	546	IPR044810	GO:0003700
	Pvu8g2599	572	SUPERFAMILY	WRKY DNA-binding domain	395	463	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pvu8g2599	572	MobiDBLite	consensus disorder prediction	174	235	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g2599	Pvu-Chr8	56596899	56600140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g2599	229	571	WRKY Transcription Factor Family	AT2G38470	55.899	8.85e-113	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pvu8g2599		WRKY	1.6e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g2599	K13424		-	gmx:100127393	986.097

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu6g0781	6	19393601	19396850	Pvu8g2599	8	56596899	56600140	PCT